Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00655 atggctggaaaaggcgatggtcctgcgatcggaatagatttaggaactacttactcttgcgttggtgtgtggcaacacgatcgtgttgaaatcatagccaatgatcagggtaacagaactacaccttcctatgttgctttcaccgacacagaacggttgatcggagatgcggccaagaaccaggtcgctatgaacccaaccaacactgttttcgATGCTAAGCGTTTGATTGGGAGGCGTTTTACCgatgcttcggtacagagtgacatgaaattgtggccgtttaaggtgatttctggccctggtgacaagcctatgattgtggtgaattacaagggGGAGGAGAAGCAGTTTTCCGCAGAAGAGATATCTTCCATGGTTCTCATGAAGATGAAGGAGATTGCCGAGGCTTACCTAGGGTCCACCATAAAAAATGCGGTGGTGACTGTTCCTGCTTACTTCAATGACTCGCAGCGTCAAGCCACCAAGGACGCTGGCGTCATTTCTGGTCTCAACGTGATGCGAATTATCAACGAGCCTACTGCGGCTGCCATTGCTTACGGGCTCGACAAAAAGGCCACTAGCGCTGGGGAGAAGAACGTTCTCATTTTCGACCTAGGTGGTGGAACTTTTGATGTTTCTCTCCTCACCATTGAGGAAGGTATTTTTGAGGTGAAAGCCACCGCTGGTGATACTCACTTGGGTGGTGAAGATTTTGACAACAGAATGGTGAACCATTTCGTTCAGGAATTCAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCCAGGGCTTTGAGGAGGTTGAGAACCGCATGCGAGAGGGCCAAGAGGACTCTCTCATCCACTGCGCAAACCACCATCGAGATTGATTCGTTGTACGAGGGCATTGACTTCTACACGACCATCACCCGTGCCCGGTTTGAAGAGCTTAACATGGATCTTTTCAGGAAGTGCATGGAGCCCGTGGAGAAGTGTTTGCGGGATGCGAAGATGGACAAGAGCACTGTCCATGATGTTGTTCTTGTTGGTGGTTCCACTAGGATCCCCAAGGTTCAGCAATTATTGCAAGACTTCTTCAATGGGAAGGAGCTGTGCAAGAGCATAAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCTGCAATCCTCAGTGGCGAGGGTAATGAAAAAGTGCAGGATCTTCTGTTGTTGGATGTTACTCCTCTCTCCCTTGGTTTGGAGACTGCAGGAGGAGTCATGACTGTGTTGATTCCCAGAAACACAACCATTCCCACCAAGAAGGAGCAGGTGTTTTCAACCTACTCCGACAACCAGCCCGGTGTGTTGAttcaggtctatgaaggtgagcgtacgaggacccgtgataacaatttgctaggcaaatttgagtTGTCCGGAATTCCTCCTGCTCCAAGGGGTGTTCCTCAGATCAACGTTTGCTTCGATATCGATGCCAATGGTATATTGAACGTGTCTGCCGAGGACAAAACCACTGGACAAAAGAACAAGATTACAATTACCAACGACAAGGGCAGGCTATCTAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAGTACAAGTCTGAAGACGAGGAGCATAAGAAGAAAGTGGAGGCCAAGAATGCGCTTGAGAATTATGCCTATAACATGAGGAACACAATCAAAGATGATAAGATTGCTTCCAAGCTTTCTGCTGATGATAAGAAGAAAATTGAAGATGCCATTGAGCAGGCTATTCAATGGCTAGACGGAAACCAACTTGCTGAGGCTGATGAATTTGAGGACAAGATGAAGGAGTTGGAGAGCATTTGCAACCCCATCATAGCTAGGATGTACCAAGGTGCCGGTGGAGATGCTGCAGGTGGAGCCATGGATGAGGATGGTCCTGCTGCTGGCAGTGGAAGTGGTGCTGGCCCCAAAATTGAGGAAGTTGATTAA 1953 0.3927 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFTDASVQSDMKLWPFKVISGPGDKPMIVVNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELESICNPIIARMYQGAGGDAAGGAMDEDGPAAGSGSGAGPKIEEVD 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00655 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cca04g00655 650 Gene3D - 192 366 - -
Cca04g00655 650 Gene3D - 71 126 - -
Cca04g00655 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 629 IPR013126 GO:0005524|GO:0140662
Cca04g00655 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cca04g00655 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cca04g00655 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Cca04g00655 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Cca04g00655 650 Coils Coil 521 541 - -
Cca04g00655 650 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Cca04g00655 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cca04g00655 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cca04g00655 650 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 629 - -
Cca04g00655 650 MobiDBLite consensus disorder prediction 620 650 - -
Cca04g00655 650 Gene3D - 10 384 - -
Cca04g00655 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cca04g00655 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Cca04g00655 650 PRINTS 70kDa heat shock protein signature 477 493 - -
Cca04g00655 650 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cca04g00655 650 Gene3D - 545 619 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00655 Cca-Chr4 6460817 6464164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00655 1 650 Calmodulin-binding Proteins AT3G12580 92.780 0.0 1232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00655 K03283 - gmx:100812707 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00655 04 6460817 6464164 Cca04g00655 04 6460817 6464164 ECH
Cca04g00655 04 6460817 6464164 Cca03g02284 03 43791487 43795024 ECH
Cca02g00934 02 25287548 25291288 Cca04g00655 04 6460817 6464164 ECH
Cca03g02284 03 43791487 43795024 Cca04g00655 04 6460817 6464164 ECH