Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00653 ATGGAGAGTAAGAATAACGATGAGGTGGAGGTGGTGGAAATGGGAGGCTCCAACGGTGTTCCTCCTAGTTCGCGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAATCTGTATAAGCAGGGAATAAAGACTCCGAGTGCTGAGGAGATACAGCAGATTACTGCTAGACTCAGGGTGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTcagaatcacaaggccaggcagagacagaagcagaagcaagaaACCATAGCTTACTTCAATCGCTTTCTTCATACGCCCCAGCCTTTTTTTTCTCCGCCAATTTGCCCAAATGCAATGTGTGCCCCATATTTCATACCTCAGGCACAGAGTGAAATTGGGTTTTATCCCCCACATTCAAAGGTGCTTGTACCTGTAGGTTTTAGGAGGAGCACATGTGAGAAGGTTGTGCCCACAGGCATGTCAAACATGTTCAATGGCCCGGTGGTATACGAAGAGAGAATCTCGGATTGTAACTTGAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGCATTTTGGAAGGAAAAACAACAGACCAGGTGTATTCTCTTGCTGCAGTTTCTGCTGATACTTCAACTGATACACCTTTTGCTTCTCCTGATATCAATCAAGACCATGCTTCGCAACTAAACCAACCCTTCTTTGATTTTTTTACTTCTTCTGGACAACCTTCTTAA 735 0.419 MESKNNDEVEVVEMGGSNGVPPSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNAMCAPYFIPQAQSEIGFYPPHSKVLVPVGFRRSTCEKVVPTGMSNMFNGPVVYEERISDCNLSYSNQETLDLFPLHPTGILEGKTTDQVYSLAAVSADTSTDTPFASPDINQDHASQLNQPFFDFFTSSGQPS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00653 244 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 11 242 - -
Cca04g00653 244 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Cca04g00653 244 MobiDBLite consensus disorder prediction 1 26 - -
Cca04g00653 244 SUPERFAMILY Homeodomain-like 23 90 IPR009057 -
Cca04g00653 244 Gene3D - 23 91 - -
Cca04g00653 244 CDD homeodomain 22 85 IPR001356 GO:0003677
Cca04g00653 244 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 242 IPR044555 GO:0003700|GO:0099402
Cca04g00653 244 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Cca04g00653 244 SMART HOX_1 21 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00653 Cca-Chr4 6445172 6447734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00653 19 238 Wox Gene Family AT5G59340 43.145 2.08e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca04g00653 Homeodomain 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00653 - - pvu:PHAVU_011G064900g 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00653 04 6445172 6447734 Cca04g00653 04 6445172 6447734 ECH