Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00649 ATGGAGGGCGACAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCTAGCATCTCCGATTACAGGCCTACGGTCAAGAAGCACTACTGCAACCTCGCGCGGAGGCTCAAGCTTCTGATCCCCATGTTCGAGGAGATTCGCGACATGAAGGACCCGATTCCCGACGACACCTCCAAGGCCGTGCTCGCCTTCAAGGAAGCTCTCGAATCCGCCACGGAACTCCTCAGATTCGGAAGTGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGACAGAATTATGAATAAATTCTATGAGGTGACAGCTCGGTTGGAACAGTCGTTGGGTGGTATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTTAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCCCTTTACAACAACAGCAGTGATGCAGCTAAAGCAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATAGGAATAGCTGATCTTACACAAGAATCAATTGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCAGGGGCACGCATTGAGAAAATTTCAATGCTATTGAAGAAGATAAAGGATTATGTGCAAACAGAAAATCTAGCCAAGGATGATAATTTAGTAGGAAAAGGCATTTTTTCGAATGTCTATGGACTCGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTAATGAGGGATCCTGTCATTGTTTCAACAGGACAGACTTACGAGCGTGCTTGTATTGAGAAGTGGTTGCAAGCAGGGCACGGGACATGCCCCAAAACACAGCAGACTCTCACTAGTACTGTTCTCACACCCAACTACGTTTTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCGTAGAGCCACCAAAACGACCCAGCAGTTCACAACCTAGTAAATCATCATCAGCCTACTCACCTGCAGAGCGAAGTAAGATTGAAGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGTCTTCTTGCAAAGCGCAATGCAGATAACCGCGTAGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTCGGCCTCCTGTCCGTGCCTGACTCCCGCACTCAAGAACATGCCGTGACAGCACTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTTTCTTCGGGGGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCAGCAACACTCTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGATCTTCAGGAGCCATACCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAAGGCAACAAGGGAAAGGCAGTGAGGGCCGGTGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTGGATGAAGCATTAGCTATTTTGGCAATATTGGCTAGCCATCCTGAAGGGAAGGCTACCATTAGAGCAGCAGAGGCGGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGTTCCCCAAGAAACAAAGAGAATGCAGCTGCTGTTTTAGTTCACCTCTGTTCTGGAGATCAACAATATCTAGCCCAGGCCCAAGAGCTGGGCGTGATGGGTCCACTATTGGAAATGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCCCAATTGCTAGAACGTATGAGCAGGCTCCATGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCACAACGAGGATACCCGACCACCGTTGATTACTAACCCTGATGATTCCTAA 1986 0.4728 MEGDNASKVIELVNEIASISDYRPTVKKHYCNLARRLKLLIPMFEEIRDMKDPIPDDTSKAVLAFKEALESATELLRFGSEGSKLYLVLERDRIMNKFYEVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYNNSSDAAKADPSVLSRLAEKLQLIGIADLTQESIALHEMVAASGGDPGARIEKISMLLKKIKDYVQTENLAKDDNLVGKGIFSNVYGLGTNEKSHQAPVIPDDFRCPISLELMRDPVIVSTGQTYERACIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGVEPPKRPSSSQPSKSSSAYSPAERSKIEGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLEMAQNGTDRGKRKAAQLLERMSRLHEQQQEVPTQTETQAHNEDTRPPLITNPDDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00649 661 SMART arm_5 547 587 IPR000225 GO:0005515
Cca04g00649 661 SMART arm_5 506 546 IPR000225 GO:0005515
Cca04g00649 661 SMART arm_5 383 423 IPR000225 GO:0005515
Cca04g00649 661 SMART arm_5 424 464 IPR000225 GO:0005515
Cca04g00649 661 SMART arm_5 589 629 IPR000225 GO:0005515
Cca04g00649 661 SMART arm_5 465 505 IPR000225 GO:0005515
Cca04g00649 661 PANTHER U BOX DOMAIN-CONTAINING 4 644 - -
Cca04g00649 661 SUPERFAMILY ARM repeat 354 635 IPR016024 -
Cca04g00649 661 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Cca04g00649 661 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Cca04g00649 661 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Cca04g00649 661 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Cca04g00649 661 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 644 - -
Cca04g00649 661 Gene3D - 4 114 IPR036537 GO:0007166
Cca04g00649 661 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Cca04g00649 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Cca04g00649 661 CDD RING-Ubox_PUB 260 302 IPR045210 -
Cca04g00649 661 Gene3D - 337 652 IPR011989 -
Cca04g00649 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Cca04g00649 661 MobiDBLite consensus disorder prediction 633 651 - -
Cca04g00649 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cca04g00649 661 SUPERFAMILY RING/U-box 247 332 - -
Cca04g00649 661 MobiDBLite consensus disorder prediction 630 661 - -
Cca04g00649 661 MobiDBLite consensus disorder prediction 328 349 - -
Cca04g00649 661 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Cca04g00649 661 MobiDBLite consensus disorder prediction 331 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00649 Cca-Chr4 6395823 6400910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00649 6 661 U-box Gene Family AT3G46510 71.081 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00649 - - gmx:100812160 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00649 04 6395823 6400910 Cca04g00649 04 6395823 6400910 ECH