Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00643 ATGGCCATGGATGAATATCAATGTGATCAGAACGTCCACGTGGCAGTTGGGAAGTCTATCAAGAAAGCTTCAACTTTGCTTCAATGGTGTTTCACCCATTTCAGCAAAGCACAAATTCGCTTAATTCATGTTTACCAACCTTCTACTAAGATCCCCACACTATTAGGAAAATTGCCAGCATCCCATGCTAGTCCCGAAGTTGTGTCTGCTTATAGAATAGAGGAAAGAGAAGAGATCAAGAGGCTTATGGAGAAGTACTTGAGCCTTTGCCGTAAAGCTAAGGTTAAGGCATCCAGTGTCATAGGTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATTTGGTTACTGTGCACAATATCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAAAAGGAATTCCAGCAAAGCAAACTATGCTGCTCAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTGTAAAGGCAAGCACATTTGGACAAGAGAAGCTTCTGAAACTCCTCGTTCTTTGTCTTCATGTGCTCAACCTAAGACTACAACTGCAGAGGGTTTGAGCTGTAGATCTTTTCAATATGGCACAAATGAATTACTCCATTCAGAATGTCTTCAATCAAATTCCACAATTATTGCAAGAAATATGGTTCAGAGGGAGATCATTGAAACAGAAGCTACTTTTTCATCCAAATCGTCCGGTTGTAATAGTCATGGTTCTCCCCAACATTCTGCTGGTTGGTATTTAGATACTCATCCAGAGTTTGAGGAAGAAACAATTGATAGTCAACTTATTGAAGCCAAAAGAGAAGCTAATGCGGCAACAGACGAGGCTCTTGCAGAGCTGTTGAAGAGCAAAAGGTTGGAAGTCAAAGCCACTGAAGCCATAAGTAAGGTCAACTTGTTTGAATATGCCCATGCACAAGAAGTAAAGCTCAGAAAAGAGGCCGAGGATGCACTAAGAGCAACAATACAGGAGCAACAGATGTTCTTGGATGAGAAAGAAGAAATTGATAGTGATCTGGAAAGGATCATGAGAAGTATTTCCCTTCTAGGAAGTTGTGCACATGAAACCAATCATAAGCGAGAAGAAGCTGCAAATGAACTATTACTAATTCAAGCATCCATCTCAAACCTGCGGCATGAAAAACAGCAAATCAGGCGACAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGCGAACAAGTTGAAGCAGATCACTGCAATGGGGTCATTGGCTTTGCTGAAGAATTCCCTGAGCTTTCTGAATTTTCATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGTTTCAAAATTAAGGAGGGTGGATATGGTTCTATTTATAAGGGCGAAATGTTAGGTAGAACAGTTGCTATAAGGAAGCTCCATCCACACAACATGCAAGGATCAACAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATCTATTAACTTTGCTAGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAATCTCCAAGACCACTTATACCAAAAAAGCAGTCTTCTCCCTTTGACTTGGAATATCCGAGCACGGTGGATTGTCGAAATTGCTAAAACTCTCTGCTTCTTACATTCTTCCAAACCACAAACTATTATCCATGGTGGTTTGACACTCGAAACCATCCTTCTTGACTCTTCATTTAGCTGCAAGATATGTGAATTTGGCAGGCTGGTGAAAGAGGAGTCACTTTACCTTCCTAGTTTCTGCTTCAGCACTGAGCCAAAGGGTTCTTTTTCATATACAGATCCCGAGTTTCACAGAACTGGTGTACTAACACCTAAATCTGACATATACTCTTTTGGAATCATCATATTGCAACTCCTCACTGGTAGGACTCCATTTGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCAAGTGGAAAATTGTCCTCAATTTTGGATTCTTCAGCTGGAGAGTGGCATTCCACTGTGGCAACACGATTGGTTGAACTGGGATTGCAATGCTGCCAACTGAATAGTAGAGATAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAGAGACCTGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAGGGAAGGCCATAAATGAATGGCTGGAAAATGGGCACGAAACATCTCCTATGACTAATTTAAAATTGAGTCACCTGCATCTCACTCACAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCCTGA 2355 0.4149 MAMDEYQCDQNVHVAVGKSIKKASTLLQWCFTHFSKAQIRLIHVYQPSTKIPTLLGKLPASHASPEVVSAYRIEEREEIKRLMEKYLSLCRKAKVKASSVIGEADQVQKGIVDLVTVHNIRKLVIGAIPENCMKVKRNSSKANYAAQNAPPFCEIWFVCKGKHIWTREASETPRSLSSCAQPKTTTAEGLSCRSFQYGTNELLHSECLQSNSTIIARNMVQREIIETEATFSSKSSGCNSHGSPQHSAGWYLDTHPEFEEETIDSQLIEAKREANAATDEALAELLKSKRLEVKATEAISKVNLFEYAHAQEVKLRKEAEDALRATIQEQQMFLDEKEEIDSDLERIMRSISLLGSCAHETNHKREEAANELLLIQASISNLRHEKQQIRRQKMEALHWLERWKSCEQVEADHCNGVIGFAEEFPELSEFSLSDLQNATCNFSESFKIKEGGYGSIYKGEMLGRTVAIRKLHPHNMQGSTEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGNLQDHLYQKSSLLPLTWNIRARWIVEIAKTLCFLHSSKPQTIIHGGLTLETILLDSSFSCKICEFGRLVKEESLYLPSFCFSTEPKGSFSYTDPEFHRTGVLTPKSDIYSFGIIILQLLTGRTPFGLAGEVRRAVSSGKLSSILDSSAGEWHSTVATRLVELGLQCCQLNSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAINEWLENGHETSPMTNLKLSHLHLTHNHALRLAIQGWLCKS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00643 784 ProSiteProfiles Protein kinase domain profile. 442 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00643 784 PANTHER OS10G0100500 PROTEIN 8 783 - -
Cca04g00643 784 SMART Ubox_2 717 780 IPR003613 GO:0004842|GO:0016567
Cca04g00643 784 Gene3D Phosphorylase Kinase; domain 1 419 514 - -
Cca04g00643 784 ProSiteProfiles U-box domain profile. 713 784 IPR003613 GO:0004842|GO:0016567
Cca04g00643 784 SUPERFAMILY Protein kinase-like (PK-like) 425 696 IPR011009 -
Cca04g00643 784 CDD RING-Ubox_WDSUB1_like 718 759 - -
Cca04g00643 784 Pfam Protein tyrosine and serine/threonine kinase 447 696 IPR001245 GO:0004672|GO:0006468
Cca04g00643 784 Gene3D HUPs 7 150 IPR014729 -
Cca04g00643 784 SUPERFAMILY RING/U-box 711 783 - -
Cca04g00643 784 Gene3D Transferase(Phosphotransferase) domain 1 515 713 - -
Cca04g00643 784 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 144 - -
Cca04g00643 784 PANTHER OS02G0152300 PROTEIN 8 783 - -
Cca04g00643 784 Coils Coil 365 385 - -
Cca04g00643 784 Pfam U-box domain 714 783 IPR003613 GO:0004842|GO:0016567
Cca04g00643 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 784 IPR013083 -
Cca04g00643 784 CDD STK_N 12 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00643 Cca-Chr4 6338712 6345096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00643 9 781 U-box Gene Family AT2G45910 36.070 2.80e-164 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca04g00643 PK_Tyr_Ser-Thr 4.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00643 - - gmx:100799032 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00643 04 6338712 6345096 Cca04g00643 04 6338712 6345096 ECH
Cca10g00421 10 4339149 4343989 Cca04g00643 04 6338712 6345096 PCT