Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00639 ATGGGGGTTTGTTTGAGCTCCCAAAATAAAGCTGGCCGCTTATGTAACACTGAGTTAAATTCAAAGCATGTGAGTGCCGATGCAAAAGATCCTAGCAGTTCAAGAAGTGAAGTTACAAATGATCTCAGCAGCACAATTGATAAGGTCTCAGAGGTTACAGTGCCTCAGACTCCCCAGAGTGAGGGTGAGATCTTGCAGCCATCCAATCTGAAGAACTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTACAGACAGTGTGTTAGGAGAAGGTAGTTTTGGATCAGTTTTTAAGGGCTGGATTAATGATCAATCACTGTCTGCTGCCAAACCTGGCACGGGGATTGTTGTTGCTGTGAAAAGAATTGATAAGGATAGCTTCCAAGGTCAACAGGATTGGTTGGCTGAAGTTAACTATCTAGGACAGCTTTCTCATCCCCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATAAAAGCCGTCTTCTGGTGTATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTCCGTTTGAAAGTGGCACTTGGAGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCCGAAACAAAAGTGATATACCGAGATTTCAAGACTTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTGCTGATTTGGAGCTGGCAAAGGATGGGCCAACACGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGCCATCTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTGCTGCTGGAAATGTTATCAGGAAGGAGAGCTGTGGACAAGAACAGACCATCAGGACAGCAAAATTTGGTGGAATGGGCAAAGCCATACCTAGCCAACAAGAGAAAGCTTTTGCGTGTGTTGGATAATCGTCTTGAAGGCCAATATGCATTAGATGAGGCCTATAAGGTAGCCACACTCTCTCTGCGATGTCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAGGTTGTCACAGATTTGGAGCAGCTTCAGCTTCCCCATGTAAACCAAAATCGTTCTGTGAATGCCTCTTGTGGTCGTAGAAAAAGTGCTGATGATTTCACCCAAGGTAGAACCGCCAAAGTTTCAGTTTCCCCACTCTCACATGACATTGCAAATACACGTGTTTGA 1251 0.4412 MGVCLSSQNKAGRLCNTELNSKHVSADAKDPSSSRSEVTNDLSSTIDKVSEVTVPQTPQSEGEILQPSNLKNFSLTELTAATRNFRTDSVLGEGSFGSVFKGWINDQSLSAAKPGTGIVVAVKRIDKDSFQGQQDWLAEVNYLGQLSHPHLVKLIGYCFEDKSRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLELAKDGPTRDKSHVSTRVMGTYGYAAPEYLATGHLSAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQQNLVEWAKPYLANKRKLLRVLDNRLEGQYALDEAYKVATLSLRCLATESKLRPNMDEVVTDLEQLQLPHVNQNRSVNASCGRRKSADDFTQGRTAKVSVSPLSHDIANTRV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00639 416 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00639 416 MobiDBLite consensus disorder prediction 22 44 - -
Cca04g00639 416 Pfam Protein tyrosine and serine/threonine kinase 87 367 IPR001245 GO:0004672|GO:0006468
Cca04g00639 416 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 40 381 - -
Cca04g00639 416 MobiDBLite consensus disorder prediction 378 397 - -
Cca04g00639 416 SUPERFAMILY Protein kinase-like (PK-like) 61 367 IPR011009 -
Cca04g00639 416 PANTHER OS01G0588500 PROTEIN-RELATED 40 381 - -
Cca04g00639 416 ProSitePatterns Protein kinases ATP-binding region signature. 91 123 IPR017441 GO:0005524
Cca04g00639 416 CDD STKc_IRAK 91 370 - -
Cca04g00639 416 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
Cca04g00639 416 Gene3D Phosphorylase Kinase; domain 1 55 170 - -
Cca04g00639 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00639 Cca-Chr4 6310050 6313784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00639 71 367 Glycoside Hydrolase AT3G07070 50.166 1.50e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca04g00639 PK_Tyr_Ser-Thr 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00639 - - gmx:100809679 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00639 04 6310050 6313784 Cca04g00639 04 6310050 6313784 ECH
Cca10g00412 10 4287619 4290644 Cca04g00639 04 6310050 6313784 PCT