Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00636 ATGGCCGGCACCAGCCTCTCTCACGTCATCCAATCGACGCTCCTGGAATTGCCGAGAACCGCCCGCCACGTCAGAATCTCCGCCAAAAGCCACCGCGTCTCCGCCACCTCCGACCACCGCCCTCAGGGTCCCTCCTGCATCTACGTCGGCCCCCTCGAAACCGCCAACCAAGAGAACCTCGAAGCTCTTTATTGCCAAGCACGGGATGCTTATTATAGTGGTCACCCTCTCATAGTTGATGACATGTTTGATAGAGTAGAGTTACGGCTAAGATGGTTTGGTTCAAAATCGGTTGTCAAGTATCCTCGGTGCAGTATCAGGAGGCAATCCACATTTGCTGATGCTGAGGAAGATCTGTCTATGGTTTTTGCATTAGCAGGCACATGGGCAATGTTCCTTGCATTTGGCAGTGTAGCTTGTGTTGGGCCCATATCATACACTGTTGGCATGGCTTATCAAAATGCATTCGATTCAGGCTTATCACTTGGTAGTGAAACACCTGTACTAGGGTTTCTGGCCTTGGTGAACAGCCTTATTTTCATTGGGCTGGGTTTTGTCATCGGCTACCCTGTTGCTTCTGCTTCAGTTAAGGTGCTTCAAGGCCTTTGGAGGAATGACTTGGTGGCCCTAAAAGGTGCATGTCCAAATTGTGGAGAAGAGGTATTTGCATTTGTGAGAATGGACAGGAATATTGACTCGCCTCACAGAGCAAATTGTCATGTGTGTGAGTGCTCATTAGAATTTCGCACAAAAGTGGAGCAATCAGTCTCAAGATTTGGTAGACAGTGGGTTTATGGGCGTATTTATCTTGTTTCACTAAGAGGCAGGGGCAACAAGGGACAAGGATCGATCATCCAACTCAAAGTTATCACATGTCGAAACACAAAAgttcaaaagcacgctctcatcggtaaccttCCTCATTCCCCCAATCAACACCCTCTTGTTCTTAGTCCTGAACCTGAAATCACCACCAGCAAAACCAACTTTTTAGACCAAAATTCTAGTGAGTTGAAgcttccttctccagattctgattatgtttctgtttctgcttctCAGTTTAACCCCCAAGATCTTTCTCAATCAAATTCAATTACTTTTAGTGATGGACTCTCAGATTTGGATTCTTCTATTGCCAAACTCTTAGCACACAATATTTTCAATGATGCTGATTCCATTTCCCAGTTTAGGAGAGGGATGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTAACCTAGTAACGGCTCTAGATTCAAAGGGAGAACAACCAATCAACACGTTTGAACAGAATTCCTATGGGTTGAAGGGTAGGAAGAATCACAAGCGCCCAGACATACAAATCAGagaagaagaagatgatgatgatgaagaagggagaagtaacaagcagTCAGCACTTAGCCTTGCTGATGAGAATGACTTGTCAGATGCAATTGATAGGGTGTTTGTGTGTGTGGAAAATGTGTGTAATGAAGACATTACTTTGCATAATGGAGCAACCAAAGTTAAGGAGCCAGATAGAGGAGGAAAGAAGGGTCGTCCAAAGAAACATGGGAGAAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGCTGATGAGTGCACAATCTGTGTATGCCAATGACTTCAGGACTGCCAATGAATATCTGAAGAAGGTTAGGCAGTACTCTTCTCCCACAGGGGATGCATCACAGAGGATTAATGGTCCCTCAGAATTTGCCTGCAAGCAACTTTATTTCACGGTTCAACAAACAGAATTTCGATTGTCATCAGTTCTGCAATCCACACAATTTGCTGTAGTACGAGGTGTCATTAGAAATGCTTGA 1830 0.4235 MAGTSLSHVIQSTLLELPRTARHVRISAKSHRVSATSDHRPQGPSCIYVGPLETANQENLEALYCQARDAYYSGHPLIVDDMFDRVELRLRWFGSKSVVKYPRCSIRRQSTFADAEEDLSMVFALAGTWAMFLAFGSVACVGPISYTVGMAYQNAFDSGLSLGSETPVLGFLALVNSLIFIGLGFVIGYPVASASVKVLQGLWRNDLVALKGACPNCGEEVFAFVRMDRNIDSPHRANCHVCECSLEFRTKVEQSVSRFGRQWVYGRIYLVSLRGRGNKGQGSIIQLKVITCRNTKVQKHALIGNLPHSPNQHPLVLSPEPEITTSKTNFLDQNSSELKLPSPDSDYVSVSASQFNPQDLSQSNSITFSDGLSDLDSSIAKLLAHNIFNDADSISQFRRGMEEASKFLPPGPNLVTALDSKGEQPINTFEQNSYGLKGRKNHKRPDIQIREEEDDDDEEGRSNKQSALSLADENDLSDAIDRVFVCVENVCNEDITLHNGATKVKEPDRGGKKGRPKKHGRKKETVDLRNLLLMSAQSVYANDFRTANEYLKKVRQYSSPTGDASQRINGPSEFACKQLYFTVQQTEFRLSSVLQSTQFAVVRGVIRNA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00636 609 PANTHER PGR5-LIKE A PROTEIN 12 273 - -
Cca04g00636 609 ProSiteProfiles GRAS family profile. 519 609 IPR005202 -
Cca04g00636 609 MobiDBLite consensus disorder prediction 420 435 - -
Cca04g00636 609 MobiDBLite consensus disorder prediction 502 523 - -
Cca04g00636 609 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 12 273 IPR039987 GO:0009535|GO:0009773|GO:0016730
Cca04g00636 609 MobiDBLite consensus disorder prediction 418 470 - -
Cca04g00636 609 MobiDBLite consensus disorder prediction 436 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00636 Cca-Chr4 6279026 6286443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00636 331 568 GRAS Transcription Factor Family AT1G07530 34.672 2.24e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00636 - - gmx:100810752 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00636 04 6279026 6286443 Cca04g00636 04 6279026 6286443 ECH
Cca10g00406 10 4231063 4233582 Cca04g00636 04 6279026 6286443 PCT