Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00634 ATGGAGTACTCCCACTTGTTAGATCTGGCGGATGAATCAGAGGATCCATACATGCGATTAGTTTATGCATCGTCATGGGCTATATCGGTGTACTTTGCATACCAACGAACTTGGAAGCCTTTTAATCCTATCCTTGGAGAGACATATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCAGAACAGGTGAGTCATCATCCCCCAATGAGTGCTGGGCATGCTGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGAACTCGTGTGACTCTTAAGAGAGATAATGTAATCTTAGATTTGGTGCCACCTCCTACAAAGGTTAACAACCTCATATTTGGCCGGACTTGGATTGATTCACCTGGGGAAATGATAATGACAAATTTGACAACTGGAGACAAAGCTATACTATATTTTCAACCATGTGGGTGGTTTGGCGCTGGTCGATATGAAGTGGATGGATATATTTATAATTCTTCTGAGGAGCCTAAAATATTAATGACTGGGAAGTGGAACGAGTCAATGAGTTATCAACCTTGTGATTTAGAAGGAGAGCCTTTTCCAAACACAGAATTGAAAGAGGTTTGGCATCTTGCTGATATTCCACAGAATGACAAATTCCAGTATACACATTTTGCTCATAAAATTAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGGCATCAGACTCTCGTCTACGCCCAGATAGATATGCACTAGAGATGGGTGATTTGGCAAAATCTGGGACAGAAAAGAGCAGTTTGGAGGAGAGACAACGAGCTGAAAAGAGAACTCGTGAGGAAAAACGGCATAACTTCACGCCAAAATGGTTTGATTTAACTGAAGAAGTGACATCAACTCCTTGGGGTGATTTGGAAATCTATCAATATAATGGTAAATACACTAAACATCGAGCTGTTGCAGATAGCTCGGGAAGCATTGATGATGTTGATGTTAAATCAACTGAATTCAATCCATGGCAGTATGTTAAAATTGTGCAGAAAGAGTCAGGCTTTCAAATTCTGAAGAGGTTAGAGTACGGGTTTAATGGCTATCAGGCTCCGGCCATGCCCCGAGCTTCCCGATCAACTAGGAGGAGGGCTAAATTTCAAAGAGCTGAAGACAATCAAAAGTGTGCATTTGACTTATTGGCCACCGTAGCTGGTAAACTATTGCAAGAGAGAGAGGATCCAACCATGTCTAGTAATGCTTCCTCAGAAAAGGATCGTTGTGGATTTGTCAAAGATTGCCAAGATGCAAATAAACCAACCAAATCTGAGCTTTCTGATGAAGGAAGTTGTCATGAAAAGAGTTTCTCCTGTCCTTCACAAACAAATGATAAAAATTGCTGTTTGAAAGAATTCCCAATTCTTGCAATTGATGGTCATGCAGGGATTGCTTCTATAGTAACAAGTTCTAGTTCCGTAGAGAGGTTCATTGCAGAGAAATTAGTGGATGGCAATAGGCATTTCAAAATGGAAAATGTTACTGGCGAAGTTAAATTAGATTCTCCTGATTGCTCAAAGGATAGTCATTTCCAGTTAGATGTTGATACTAGTAAAGGAAAGGATGAGTTGCATAAGTTTGAGAATGTGCCAAATGGCAGTGGGATTGACATGTGCAGTTTTGAGAAACCGTTGGATGAAAATCCTCCTGCATTGATCAGTATAGGTGGCAATGCCAAATTGTCTGGCTATAATGATAGGACTCCCCTGTCCAAAGGTTGTGACGATGTACCTGTAGTTAGTAGAGATGATGACGAAAACTCTTCTGGGTGTATTCACCCTATTAATACTAAACCTAAGTCCTTTAGGCCAAAGAATTGTATAGGTGATAATAGAATAAGTAAGAGACTGGCTTCTAACTTTCGGAAAGTTGCTGAAAAACCAAAGGATGGCACACGTTTTAACAGTGATGGAGATTGGAAGCGAACTTACTACAGTAAGAGGAACTGCAATAAACGCCAAAGTTCTCAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTATTATAGCTCTGTTTCAAATACTAATGCATTTATCAGGAGTGGTGGCATTTATTATTCACCTGAGAATTGTATGAATAAGGATGCTTGTGATTCACCTCCTGGGATGCACAAAGTGAAGCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATAGAGGTTCCGGAAACAGCAACAATTGGGTCCTTAAAGAGGACGGTGATGGATGCTGTGACTGCTGTACTTGGAGGTGAATTGCACGTTGGTGTTTTTCTCCAGGGAAAGAAAGTTAGGGATGACAGTAAAACTCTGCTTCAAACCGGAATTTCTCACGATAACCAGATGGATGCTTTGGGTTTCACTCTAGAGTCTAATTCTTCACATAGCCTACCGATTGTATGTGCTGCACATTCTCCCCGTCCTAGTGCTGACATAACTCAGCCTGTAATAAGGTATCCTTCCAGTCCAGCTGTAATTGATCAGAAGATTCAAGGCAATTCTGACATGTCACCTGAGCATCAAGTAACTAGTTTAGCTAGCCATTTTGAAAGTGACTACGATTCAGCACCTTCTCCTATTAACATGTCTGTTGACAACGGTATGAAAGATTCCAAAGAACTGGTTACTGTTCTTGAAATGGATAAGGAGGAACTAGCTATGGTACCTGTACTCCAGAAGCCAAAGCGATCTGAGGTTGTACAGCGCCGAATACGAAGGCCATTTTCTGTAGAAGAGGTTGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGGTGGCGTGATGTTAAGATTTGTGCCTTTGATAATGCAAAGCATCGCACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACTCATATTGGTCACAGCAGCAGACCAAACAACAGCACAAACAGCACCCAGAAACTGAAACTGTCTTCTCCTTTAATAATGGCCAGGGCCATGTGGATGGAGGGGTTATGGTTTCTGACTTTTGTTATTAG 3114 0.411 MEYSHLLDLADESEDPYMRLVYASSWAISVYFAYQRTWKPFNPILGETYEMVNHGGITFLAEQVSHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDVYPVGRTRVTLKRDNVILDLVPPPTKVNNLIFGRTWIDSPGEMIMTNLTTGDKAILYFQPCGWFGAGRYEVDGYIYNSSEEPKILMTGKWNESMSYQPCDLEGEPFPNTELKEVWHLADIPQNDKFQYTHFAHKINSFDTAPRKLLASDSRLRPDRYALEMGDLAKSGTEKSSLEERQRAEKRTREEKRHNFTPKWFDLTEEVTSTPWGDLEIYQYNGKYTKHRAVADSSGSIDDVDVKSTEFNPWQYVKIVQKESGFQILKRLEYGFNGYQAPAMPRASRSTRRRAKFQRAEDNQKCAFDLLATVAGKLLQEREDPTMSSNASSEKDRCGFVKDCQDANKPTKSELSDEGSCHEKSFSCPSQTNDKNCCLKEFPILAIDGHAGIASIVTSSSSVERFIAEKLVDGNRHFKMENVTGEVKLDSPDCSKDSHFQLDVDTSKGKDELHKFENVPNGSGIDMCSFEKPLDENPPALISIGGNAKLSGYNDRTPLSKGCDDVPVVSRDDDENSSGCIHPINTKPKSFRPKNCIGDNRISKRLASNFRKVAEKPKDGTRFNSDGDWKRTYYSKRNCNKRQSSQMNIPFKKRKLYYSSVSNTNAFIRSGGIYYSPENCMNKDACDSPPGMHKVKLRIKSFRVPELFIEVPETATIGSLKRTVMDAVTAVLGGELHVGVFLQGKKVRDDSKTLLQTGISHDNQMDALGFTLESNSSHSLPIVCAAHSPRPSADITQPVIRYPSSPAVIDQKIQGNSDMSPEHQVTSLASHFESDYDSAPSPINMSVDNGMKDSKELVTVLEMDKEELAMVPVLQKPKRSEVVQRRIRRPFSVEEVEALVQAVEKLGTGRWRDVKICAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLVAHSYWSQQQTKQQHKQHPETETVFSFNNGQGHVDGGVMVSDFCY 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00634 1037 SUPERFAMILY Oxysterol-binding protein-like 1 334 IPR037239 -
Cca04g00634 1037 SMART sant 917 970 IPR001005 -
Cca04g00634 1037 Gene3D - 907 1010 - -
Cca04g00634 1037 SUPERFAMILY Ubiquitin-like 723 805 IPR029071 -
Cca04g00634 1037 Pfam Oxysterol-binding protein 1 322 IPR000648 GO:0008289
Cca04g00634 1037 MobiDBLite consensus disorder prediction 265 285 - -
Cca04g00634 1037 ProSiteProfiles Myb-like domain profile. 913 968 IPR001005 -
Cca04g00634 1037 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 360 1014 - -
Cca04g00634 1037 ProSitePatterns Oxysterol-binding protein family signature. 62 73 IPR018494 -
Cca04g00634 1037 PANTHER TELOMERIC REPEAT BINDING PROTEIN 360 1014 IPR031105 -
Cca04g00634 1037 Gene3D - 254 353 - -
Cca04g00634 1037 CDD SANT_TRF 919 969 - -
Cca04g00634 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 914 972 IPR017930 -
Cca04g00634 1037 Gene3D - 46 221 - -
Cca04g00634 1037 SUPERFAMILY Homeodomain-like 919 1000 IPR009057 -
Cca04g00634 1037 MobiDBLite consensus disorder prediction 267 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00634 Cca-Chr4 6256177 6271804 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca04g00634 Oxysterol_BP 1.9e-84 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00634 - - ccaj:109798415 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00634 04 6256177 6271804 Cca04g00634 04 6256177 6271804 ECH
Cca10g00405 10 4222428 4227882 Cca04g00634 04 6256177 6271804 PCT