Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00633 ATGGATCCCCATTTCAAGTCCAATTTCATCAACGGTGTTAGACTCAACCAAGTTCCCAACACGCTCCATGCAGAGGATCAGATGAAACCCTTTGAATTTGGATTCGTGGATAACCCCTTTCTTCTTCCACCTGATCCAAACGCTGCTCAAAATCCTCTTTTTCTCTCCACCGAAGAAGACTCTCCCTTGGATGAGTCAGATTTTTCTGCCACTGTCCTACGCTACATAAACCAAATGCTCATGGAAGAGGACTTGGAGGAGAAGCCGTGTATGTTCAACGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGATGTCATTGGTGAGACATACCCTTCTTATTCTTCTTCCATCCAAAACTCTCAGGACAGTCCTGATGAAAGTAGTAGCATCAGTGGTACAACAACTAGCACTGTTAATAACTCAGTTGAGTGCCATTGGAATAATGGTGATGTTACTGACAACAAGCCTTCCATGATGCAATCCACTTTGCCTGCTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCTTTGAACACCCCAACCACAAGCAACTATGCTGTAAAGGACAATGGATTCATGGCAAGTTCTGGATTTTTAACTCCAGGGTCAACAACCTTGTTTAGCAAGAGTGAATCTGTGCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTTCTCCCTAAAGGGAATCCATTGGTTATTGACTTGGAGAACCCCTCCTTTGTAAAGGTGCCTCCTCGGACGGTGGAAATTAAGGCGGAGAGAGATGAAATTTCTCCAGAGTCAAGAGgaaggaagaatcacgagcgggaagatggagaagcagaattacaagatggaagaagcaacaagcaGTCAGCTGTGTACACTGATGATGACAGTGAGCTATCAGAATTGCTTGATAAGATACTGCTGGGCGCAAGGTGGGGAAATGAGCCAGCTCCTTTGTGTATTTGTTTCGCGGATCTTCCCAATGGACCATCCTTGGGTAAATTAGAGGAAGCAAAAAAGTCTGATGGCGGGAAGAGCCGTGTTAAGAAACAAAGCAACAAGAAGGGAGTTGTGGATCTGAGTACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGCGTAACTGCTAATGAGTTATTGAAGCAGATAAGGCAACATTCTTCTCCACTAGGTGATGGAACTCAGAGGTTGGCTCATTCCTTTGCAAATGCTCTTGATGCACGTTTGGCTGGCACTGGCACTCAGATTTATACTGCGTTGTCCAACAAAAAAACCTCTGCCGCGGACATGGTGAAGGCTTATCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTTGCAATCATTTTTGCAAACCATACAATTTTGCATCTAGCCAAGGAAGTTGAAACTCTTCACATTATAGACTTTGGCATCCGCTATGGCTTTCAGTGGCCAGCTCTTATTTATCGTCTATCAAGACGACCTGGTGGGCCGCCCAAGCTGCGCATTACAGGGATAGAGCTTCCTCAGCCTGGTTTCAGGCCAAAGGAGAGAGTCCAGGAGACGGGGCTTCGCCTTGCAAGGTATTGTGATCGCTTTAATGTTCCATTTGAGTTCAATGCTATTGCTCAGAAATGGGAAACCATCAAACTTGAGGACTTGAAAATAAAGGAGAATGAACTTCTTGCAGTGAATGCCATGTTTCGATTTCAAAATCTACTTGATGAGACAGTTGTGTCGAATAGTCCCCGGGATACTGTTTTAAATTTAATAAGGAAGGCAAATCCCAATATCTTCATACATGCTACTGTCAATGGAAGCTACAATGCTCCATTCTTTGTGACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACCAATACTGCTCGGGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGGCGGCGGGTAATGAATATCATCGCTTGTGAGGGTTGTGAGAGAGTTGAGAGGCCTGAGACATACAAACAATGGCAGGTTCGACACATGAGGGCTGGATTTAGGCAACTTCCCTTGGATCAACAGCTTATTAACAAATTAAGATGCAAGTCAAAAGGTGTGTACCACAGTGATTTCATGCTTCTTGAAGATGGCAACTATATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCCTCCTGTTGGGTGCCTGCATAG 2208 0.4293 MDPHFKSNFINGVRLNQVPNTLHAEDQMKPFEFGFVDNPFLLPPDPNAAQNPLFLSTEEDSPLDESDFSATVLRYINQMLMEEDLEEKPCMFNDSLALQAAEKSFYDVIGETYPSYSSSIQNSQDSPDESSSISGTTTSTVNNSVECHWNNGDVTDNKPSMMQSTLPADFVFQASSIQSSLNTPTTSNYAVKDNGFMASSGFLTPGSTTLFSKSESVLQFERGVEEANKFLPKGNPLVIDLENPSFVKVPPRTVEIKAERDEISPESRGRKNHEREDGEAELQDGRSNKQSAVYTDDDSELSELLDKILLGARWGNEPAPLCICFADLPNGPSLGKLEEAKKSDGGKSRVKKQSNKKGVVDLSTLLILCAQAVSSDDRVTANELLKQIRQHSSPLGDGTQRLAHSFANALDARLAGTGTQIYTALSNKKTSAADMVKAYQMYISACPFKKLAIIFANHTILHLAKEVETLHIIDFGIRYGFQWPALIYRLSRRPGGPPKLRITGIELPQPGFRPKERVQETGLRLARYCDRFNVPFEFNAIAQKWETIKLEDLKIKENELLAVNAMFRFQNLLDETVVSNSPRDTVLNLIRKANPNIFIHATVNGSYNAPFFVTRFREALFHYSTLFDVLDTNTAREDPMRLMFEKEFFGRRVMNIIACEGCERVERPETYKQWQVRHMRAGFRQLPLDQQLINKLRCKSKGVYHSDFMLLEDGNYMLQGWKGRVVYASSCWVPA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00633 735 MobiDBLite consensus disorder prediction 117 142 - -
Cca04g00633 735 MobiDBLite consensus disorder prediction 257 284 - -
Cca04g00633 735 ProSiteProfiles GRAS family profile. 353 733 IPR005202 -
Cca04g00633 735 MobiDBLite consensus disorder prediction 257 296 - -
Cca04g00633 735 Pfam GRAS domain family 363 732 IPR005202 -
Cca04g00633 735 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 734 IPR005202 -
Cca04g00633 735 PANTHER SCARECROW-LIKE PROTEIN 14 40 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00633 Cca-Chr4 6246505 6249114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00633 72 735 GRAS Transcription Factor Family AT1G07530 55.571 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00633 GRAS 2e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00633 - - gmx:100815586 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00633 04 6246505 6249114 Cca04g00633 04 6246505 6249114 ECH
Cca10g00403 10 4199642 4201899 Cca04g00633 04 6246505 6249114 ECH
Cca07g01404 07 36926389 36930303 Cca04g00633 04 6246505 6249114 ECH
Cca01g01686 01 38735204 38738927 Cca04g00633 04 6246505 6249114 ECH