Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00632 ATGGATGAAGACAACGATTTCTCAGAAACCGGCAAGTTCATAAACCAGATCCTCATGGAAGAGAACGTCCAACAGAGACCATTCTATGATTCACTCTCCTTGCAACTTACCGAGAAATCCTTCTACCACGCTCTCACCGGAACCCTACCTCTTTCCCCCCATCAACACCCCCTTGTTCACAGTCCCGAAACTGAAACCACCAACACCAGTAGCAGCTCCAATAGCAACAACGGTGACAACTTCTTTTCAGATGAAAATTCTCGTGAGTTCAAGCctccttctccttctccagattctgtttctgtttctgtttctgcttttcagtttAACCCCCATGCCCTTTCTCAACCACCTTCACTTACTGTTGCTGATCGACTCTCTGATTTGGATTCTTCTATTGCCAAACTCTTGGCGCAGAATATTTTCAGTGATGTTGATTCTGTTTCTCAGTTTAGGAGAGGCTTGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTAACCTTGTAACCCCTCTAGGTTCAAAGGGAGAACAATCAAATAACACGTTGGGAGATGATTCCTATGGGTTGAAGTTGAAGGGTAGGAGGAATCACCAACGCCAGGAGATACAAATCAGGgaagacgaagaagatgatgatgatgatgaACAAGGGAGAAGTAACAAGCAATCAGCACTTTCCTTTGTTGATGAGAGTGACTTGTCCGATGCCTTTGATCGGGTGTTGCTAAATGTTGAAACCGTGTGTACTGAACACACTAGTGGAGCAGTGAAAATTGAGGAGCCAGATGGAGGGAAGGGTCGTTCTAAGAAACAAGGGAGGAAGAAAGAAACAGTGGATTTGAGGAATCTTCTGATGATGTGTGCACAATCTGTCTATGCCAATGACAACAGAACTGCCAATGAATATCTCAAGCAGATTAGGCAGCACTCTTCTCCCTTTGGAGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGTTGGAGATGGTACAGGTGCACAAGGAATGCATTCTTTTTTCAACTCTAATAGGATCACTGCTGCTGAGTTTCTCAAGGCATACCAGGTTTTCCTATCTGCCAGCCCTTTCAAGAAGTTTACATATTTCTTTGCAAATAAAATGATTATGAAAGCAGCTGCAAAGGCTGAAATTGTCCATGTTATTGATTTTGGCATCCTACATGGTTTCCAATGGCCAATTCTTATCAAGTTTTTATCAAATAGAGAAGGTGGACCTCCCAACTTGAGGATCACAGGGATAGAGTTTCCCCAACCTGGATTTCGCCCCACAGAAAGAATTGAGGAGACAGGTCGCCGTCTGGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAGTACAATGTGATAGCTTCACGAAACTGGGAAACCATTCAGGTTGAAGACTTTAAAATTGAGAGGAATGAGCTAGTTGTTGTGAACTCTCTGATGAGGTTTGAGAATTTACTGGATGAGACTTTTGATATGAACAGTCCTAGAAATGCACTCCTGCATTTGATTAGGAAGATAAATCCGGATATTTTTACTCAGTCCATCGTTAATGGATCATACAATTCCCCCTTCTTTGCTACGCGGTTTAGGGAGGCACTGTTTCATTATTCTGCTATTTATGATATGTTTGACACTGTAATACCTCGTGAGAACCAATGGAGGTTGATGATTGAGAGAGAGATTTTGGCCCGGGAGAGTATGAATGTTATAGCATGTGAAGGTTCTGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGAATGGTGAATTAATGACCAAATTCAAGACTAAGTTAAAGGAATGGTACCACAAAGATTTTATCTTGGATGAAGATAACAACTGGATGCTTCAAGGTTGGaaaggccgcatattgtatgcttccacatgctgggtgccagcataa 1977 0.4057 MDEDNDFSETGKFINQILMEENVQQRPFYDSLSLQLTEKSFYHALTGTLPLSPHQHPLVHSPETETTNTSSSSNSNNGDNFFSDENSREFKPPSPSPDSVSVSVSAFQFNPHALSQPPSLTVADRLSDLDSSIAKLLAQNIFSDVDSVSQFRRGLEEASKFLPPGPNLVTPLGSKGEQSNNTLGDDSYGLKLKGRRNHQRQEIQIREDEEDDDDDEQGRSNKQSALSFVDESDLSDAFDRVLLNVETVCTEHTSGAVKIEEPDGGKGRSKKQGRKKETVDLRNLLMMCAQSVYANDNRTANEYLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGTGAQGMHSFFNSNRITAAEFLKAYQVFLSASPFKKFTYFFANKMIMKAAAKAEIVHVIDFGILHGFQWPILIKFLSNREGGPPNLRITGIEFPQPGFRPTERIEETGRRLANYCKRYNVPFEYNVIASRNWETIQVEDFKIERNELVVVNSLMRFENLLDETFDMNSPRNALLHLIRKINPDIFTQSIVNGSYNSPFFATRFREALFHYSAIYDMFDTVIPRENQWRLMIEREILARESMNVIACEGSERIERPETYKQWQVRNTRAGFKQLPLNGELMTKFKTKLKEWYHKDFILDEDNNWMLQGWKGRILYASTCWVPA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00632 658 ProSiteProfiles GRAS family profile. 272 656 IPR005202 -
Cca04g00632 658 MobiDBLite consensus disorder prediction 189 205 - -
Cca04g00632 658 MobiDBLite consensus disorder prediction 159 226 - -
Cca04g00632 658 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 657 - -
Cca04g00632 658 Pfam GRAS domain family 281 655 IPR005202 -
Cca04g00632 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 657 IPR005202 -
Cca04g00632 658 MobiDBLite consensus disorder prediction 256 275 - -
Cca04g00632 658 MobiDBLite consensus disorder prediction 172 186 - -
Cca04g00632 658 MobiDBLite consensus disorder prediction 53 102 - -
Cca04g00632 658 MobiDBLite consensus disorder prediction 59 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00632 Cca-Chr4 6242146 6244735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00632 12 658 GRAS Transcription Factor Family AT1G07530 46.331 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00632 GRAS 1e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00632 - - gmx:100795855 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00632 04 6242146 6244735 Cca04g00632 04 6242146 6244735 ECH
Cca10g00402 10 4186165 4189741 Cca04g00632 04 6242146 6244735 ECH
Cca10g00403 10 4199642 4201899 Cca04g00632 04 6242146 6244735 PCT