Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00631 ATGGAAGCAAATTTTCCCTTTGGTGAAGAAGAAAAAGATGAGAGCATATTATATGTCTCCGATTCTCTTGGTTTTGCAGCCACGGATCTTTCGTTGGAAGACAAAGACAACGATTTCTCAGAAACCGCAAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTGGAACATAGGCCTTTCTATGACTCTTTCTCCTTGCAAGTTACAGAGAAATCCTTCTACCACGCTCTCATCGGTAACCTTCCTCATTCCCCCAATCAACACTCCCTTGTTCTTAGTCCTGAACCTGAAATCACCACCACCACCAGCAAAAACAATTTTTTAGACCAAAATTCTAGTGAGTTGAAGCTtccttctccttctccttctccttctGCTTTTCAGTTTGACCACCGCGACCTTTCTCAACAACCTTCAATTACTGTTAGTGATGGACTCTCAGATTTGGATTCTTCTATTGCCAAACTCTTAGCACACAATATTTTCAATGATGCTGATTCCGTTTCCCAGTTTAGGAGAGGGATGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTAACCTAGTAACTGCTCTAGATTCAAACCCTAAACAACCGACCAACGCGTTTGGACAGAATTCCTATGGGTTGAAGAGTAGGAAGAATCAGAAGCGCCAAGAGACAGACAATAGGgaagaaaaagaagatggtgaagaagaagggagaagtaacaagCAACCAGCACTTAGCCTTGCTGATGAGAATGACTTGTCAGATGCAATTGATAGGGTGTTTGTGTGTGTGGAAAATGTGTGTAATGAAGACATTTCTTTGCATAATGGAGCAACCAAAGTTAAGGAGCCAGATAGAGGAGGAAAGAAGGGTCGTCCAAAGAAACATGGGAGAAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGCTGATGAGTGCACAATCTGTGTATGCCAATGACTTCAGGACTGCCAATGAATATCTGAAGAAGGTTAGGCAGTACTCTTCTCCCACAGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGATTGGGGGCGGTACAACTGCATTAGGGCTTTTTTCTTTGCTGAGTTCTAAGAAGGTTACTGCTGCTGAGTTTCTCAAGGCATACCAAATTTTCCTATCTGCCTCCCCTTTTACCAAGTTTACATATTTCTTTGCAAATAAAATGATTATGGAAGCAGCTGCTAAGGCAGAAACAATCCATATTATTGATTTTGGCATCCTACATGGTTTCCAATGGCCAATTCTTATTAAGTTTTTATCAAATAGAGAGGGTGGACCTCCCAAGCTGAGGATCTCAGGGATAGAGTTTCCCCAACCTGGCTTTCGTCCCACAGAAAGCATTGATGAGACTGGTTGCCGTCTGGCTAATTATTGCAAGCGTTACAATGTTCCCTTTGAGTACCATGCCATAGCATCAAGGAACTGGGAAACCATTCAGGTGGAAGCGCTTAAAATTGAAAGCAATGAGGTAGTTGCTGTCAACTGTCACAATAGGTTTGAAAATTTACCCGATGAAAGTACTGATGAATTGGATAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGaagataaatccagatatttttactcagaccatcagtaatggatcacataattctcctttctttgccacacggtttagggAGGCACTCTTCCATTTCACTGCTATTTATGATGTGCTTGACACTGTCATACCTCGTGATAACAAATGGAGGATGATGATTGAGAGCGAGATTATGGGCCGGGAGGTTATGAATGTTGTAGCATGCGAAGGTCCTCAGAGAGTTCAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGATTACAAGGGCGGGTTTCAAGCAGCTCCCACTTAATAAGGAATTAATGACCAAATTTAGGACAAAGTTAAGGGATTACCACAAAGATTTTGTCTTAGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGACGCATTTTTAATGCTTCCACTTGTTGGGTGCCAGCATAA 2040 0.3985 MEANFPFGEEEKDESILYVSDSLGFAATDLSLEDKDNDFSETAKFISQILMEENVEHRPFYDSFSLQVTEKSFYHALIGNLPHSPNQHSLVLSPEPEITTTTSKNNFLDQNSSELKLPSPSPSPSAFQFDHRDLSQQPSITVSDGLSDLDSSIAKLLAHNIFNDADSVSQFRRGMEEASKFLPPGPNLVTALDSNPKQPTNAFGQNSYGLKSRKNQKRQETDNREEKEDGEEEGRSNKQPALSLADENDLSDAIDRVFVCVENVCNEDISLHNGATKVKEPDRGGKKGRPKKHGRKKETVDLRNLLLMSAQSVYANDFRTANEYLKKVRQYSSPTGDASQRLAHYFANGLEARLIGGGTTALGLFSLLSSKKVTAAEFLKAYQIFLSASPFTKFTYFFANKMIMEAAAKAETIHIIDFGILHGFQWPILIKFLSNREGGPPKLRISGIEFPQPGFRPTESIDETGCRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEVVAVNCHNRFENLPDESTDELDSPRNAVLHLIRKINPDIFTQTISNGSHNSPFFATRFREALFHFTAIYDVLDTVIPRDNKWRMMIESEIMGREVMNVVACEGPQRVQRPETYKQWQVRITRAGFKQLPLNKELMTKFRTKLRDYHKDFVLDEDNNWMLQGWKGRIFNASTCWVPA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00631 679 MobiDBLite consensus disorder prediction 275 297 - -
Cca04g00631 679 MobiDBLite consensus disorder prediction 191 212 - -
Cca04g00631 679 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 678 IPR005202 -
Cca04g00631 679 MobiDBLite consensus disorder prediction 178 247 - -
Cca04g00631 679 ProSiteProfiles GRAS family profile. 293 677 IPR005202 -
Cca04g00631 679 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 26 678 - -
Cca04g00631 679 MobiDBLite consensus disorder prediction 110 129 - -
Cca04g00631 679 MobiDBLite consensus disorder prediction 213 236 - -
Cca04g00631 679 Pfam GRAS domain family 302 676 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00631 Cca-Chr4 6237314 6239353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00631 44 679 GRAS Transcription Factor Family AT1G07530 46.176 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00631 GRAS 9.3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00631 - - gmx:100795855 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00631 04 6237314 6239353 Cca04g00631 04 6237314 6239353 ECH
Cca10g00402 10 4186165 4189741 Cca04g00631 04 6237314 6239353 PCT
Cca04g00631 04 6237314 6239353 Cca10g00403 10 4199642 4201899 PCT