Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00630 ATGGAAGCAAATTTTCCCATTGGTgaagaagaagaagaagaagaGAGCATATTATATGTCTCCGATTCTCTTGGTTTTGCAGCCACGGATCCTTCGTTGGAAGACAAAGACAACGATTTCTCAGAAACCGCGAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTGAACACAGGCCTTTCTATGACTCTTTTACAGAGAAATCCTTCTACCACGCTCTCATCGGTAACCTTCCTCATTCCCCCAATCAACACCCTCTTGTTCTTAGTCCTGAACCTGAAATCACCACCAGCAAAACCAACTTTTTAGACCAAAATTCTAGTGAGTTGAAgcttccttctccagattctgattatgtttctgtttctgcttctCAGTTTAACCCCCAAGATCTTTCTCAATCAAATTCAATTACTTTTAGTGATGGACTCTCAGATTTGGATTCTTCTATTGCCAAACTCTTAGCACACAATATTTTCAATGATGCTGATTCCATTTCCCAGTTTAGGAGAGGGATGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTAACCTAGTAACGGCTCTAGATTCAAAGGGAGAACAACCAATCAACACGTTTGAACAGAATTCCTATGGGTTGAAGGGTAGGAAGAATCACAAGCGCCCAGACATACAAATCAGagaagaagaagatgatgatgatgaagaagggagaagtaacaagcagTCAGCACTTAGCCTTGCTGATGAGAATGACTTGTCAGATGCAATTGATAGGGTGTTTGTGTGTGTGGAAAATGTGTGTAATGAAGACATTACTTTGCATAATGGAGCAACCAAAGTTAAGGAGCCAGATGGAGGAGGAAAAAAGGGTCGTCCAAAGAAACATGGGAGAAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGCTGATGAGTGCACAATCTGTGTATGCCAATGACTTCAGGACTGCCAATGAATATCTGAAGAAGGTTAGGCAGTACTCTTCTCCCACAGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGATTGGGGGTGGTACGACAGCATTAGGATTTTTTTCTTTGCTGAGTTCTAAGAAGGTTACTGCTGCTGAGTTTCTCAAGGCATACCAAATTTTCCTATCTACCACCCCTTTTACCAAGTTTACATATTTCTTTGCAAATAAAATGATTGGGGAAGCAGCTGCAAAGGCAGAAACCGTCCATATTATTGATTTTGGCATCCTACATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAAAAGAGAGGGTGGACCTCCCAAGTTGAGGATCACAGGCATAGAATTTCCCCAACCTGGATTTCGCCCCACAGAAAAAATTGaggagaccggtcgccgtctagctaactattgcaagcgttaCAATGTTCCTTTTGAGTATCATGCCATAGCATCAAGGAGCTGGGAAACCATTCAGGTTGAAGCCCTTAAAATTGAGAGAAACGAGGTAGTTGCTGTCAACTGTTACTTGAGGTTTGAAAATTTACTTGATGAGAGTACTGATGAATTGGACAGTCCTAGAAATGCAGTCCTGAATTTGATCAGGAAGATAAATCCGGATATTTTCACTCAGGTCATCAATAATGGATCACATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCACTCTTCCATTTTACTGCTGTTTATGATGTGTTTGACACTGTCGTACCTCGTGATAATGAATGGAGGATGATGATTGAGAGCGAGATTTTGGGCCGGGAGGTTATAAATGTTGTAGCATGTGAAGGTCCTCAGAGGGTTCAGAGGCCTGAGACGTACAAACAGTGGCAGGTTAGGATTACAAGGGTTGGTTTCAAGCAGCTCCCACTGAATAAGGAATTAATGGCCAAATTTAGGACTAAGTTAAGGGAATACCACAGAGATTTTGTCCTAGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGGCGCATTTTTAATGCTTCCACTTGTTGGGTGCCGGCATAA 2034 0.3938 MEANFPIGEEEEEEESILYVSDSLGFAATDPSLEDKDNDFSETAKFISQILMEENVEHRPFYDSFTEKSFYHALIGNLPHSPNQHPLVLSPEPEITTSKTNFLDQNSSELKLPSPDSDYVSVSASQFNPQDLSQSNSITFSDGLSDLDSSIAKLLAHNIFNDADSISQFRRGMEEASKFLPPGPNLVTALDSKGEQPINTFEQNSYGLKGRKNHKRPDIQIREEEDDDDEEGRSNKQSALSLADENDLSDAIDRVFVCVENVCNEDITLHNGATKVKEPDGGGKKGRPKKHGRKKETVDLRNLLLMSAQSVYANDFRTANEYLKKVRQYSSPTGDASQRLAHYFANGLEARLIGGGTTALGFFSLLSSKKVTAAEFLKAYQIFLSTTPFTKFTYFFANKMIGEAAAKAETVHIIDFGILHGFQWPILIKFLSKREGGPPKLRITGIEFPQPGFRPTEKIEETGRRLANYCKRYNVPFEYHAIASRSWETIQVEALKIERNEVVAVNCYLRFENLLDESTDELDSPRNAVLNLIRKINPDIFTQVINNGSHNSPFFATRFREALFHFTAVYDVFDTVVPRDNEWRMMIESEILGREVINVVACEGPQRVQRPETYKQWQVRITRVGFKQLPLNKELMAKFRTKLREYHRDFVLDEDNNWMLQGWKGRIFNASTCWVPA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00630 677 MobiDBLite consensus disorder prediction 208 222 - -
Cca04g00630 677 Pfam GRAS domain family 300 674 IPR005202 -
Cca04g00630 677 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 25 676 - -
Cca04g00630 677 MobiDBLite consensus disorder prediction 180 242 - -
Cca04g00630 677 ProSiteProfiles GRAS family profile. 291 675 IPR005202 -
Cca04g00630 677 MobiDBLite consensus disorder prediction 273 294 - -
Cca04g00630 677 MobiDBLite consensus disorder prediction 192 207 - -
Cca04g00630 677 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 676 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00630 Cca-Chr4 6229485 6232154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00630 45 677 GRAS Transcription Factor Family AT1G07530 46.154 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00630 GRAS 1.7e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00630 - - gmx:100795855 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00630 04 6229485 6232154 Cca04g00630 04 6229485 6232154 ECH
Cca10g00401 10 4172367 4174824 Cca04g00630 04 6229485 6232154 ECH
Cca04g00630 04 6229485 6232154 Cca10g00402 10 4186165 4189741 PCT