Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00629 ATGTGTGACGCTGTCGTACCTCGTGAAAATGAATGGAGGATGTTGATTGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGGATTGAGAGGCCTGAGACATACAAAAAGTGGTATATTAGAAACACGAGGGCTGGTTTCAAGCAGCTTCCACTGAATGAGGAATTAATGGAGAAATGCAGGAGTCAGTTAAGGGAATGGTACCACAGAGATTTTTTCGTAGATGAAGATAACGAGTGGATGCTTCAAGGTTGGAAAGGCAGAGTTTTGTATGCTTCCTCTTGTTGGGTTCCGGCATAG 324 0.4444 MCDAVVPRENEWRMLIEREIVGREAMNVIACEGSERIERPETYKKWYIRNTRAGFKQLPLNEELMEKCRSQLREWYHRDFFVDEDNEWMLQGWKGRVLYASSCWVPA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00629 107 ProSiteProfiles GRAS family profile. 1 105 IPR005202 -
Cca04g00629 107 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 106 IPR005202 -
Cca04g00629 107 Pfam GRAS domain family 3 104 IPR005202 -
Cca04g00629 107 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00629 Cca-Chr4 6228338 6228661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00629 1 107 GRAS Transcription Factor Family AT1G07530 55.140 1.86e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00629 GRAS 4.4e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00629 - - pvu:PHAVU_011G063200g 200.29