Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00628 ATGGAGGCAAACACTCCCTCTGATCCTTGGCTGGAAGACAACGATTTCTCAGAAACTGCAAACTTCATAAACCAGATCCTCATGGAAGAGAATTTTGATGAGTGCCCATTCTATGATTCATTCACCTTGCAAGTCACCGAGAAATCCTTCTACGACGCTCTCACTGGTACTCTACCTCTTTCTCCCACTCAAAACCCTCTTGTTCTCACTCCCCAGGCTGAAACTACCAACAAGAACGATTTTTCTGATGAAAATTTTCGTGAGCTGAAGCAACGTTTTCAAGATTCTGCTTTTCAGTTTAATCCCCAAGTTTCCCAACCACACTTGGATTCTTCTACTGCCACAGTGATGCCACATAATAAGTTGAATGATGGTGATTATGTTTGTGATTTTAGGAGAGGCTTGGAGGAAGGTAGGAGGTTTCTTCCTGCAGGATCAAACCTTGTAACCTTGAAGGGTAGGAAGAATCACGAGCGCCATGAGAGAGATACCATagaagaagaggaagaagggagaagtaacaagcaaTCAGCACTTAGTGTTGCGGATGAGATCGACTTATCAGAGGCTATTGATCGGGTGTCTCTGAGCAGCGAAAACGTGTGCGATGAACAAAGTTGTTTCCGGAGTGGTGGGAAGGGTCGTCCTAAGAAACAAGGGAGGAACGCTTGGTGGATGAAGAAGGGTAAGGAAAAGGAAATAGTAGATTTGAGGAATCTTCTGCTGATGTGTGCACAATCTGTGTACGCCAATGATAACAGAACTGCAAATGAATATCTGAAGCAGATAAGGCAGAACTCTTCTCCCACTGGGGATGCATTACAGAGGTTGGCTCATTACTTTGCCAATGGCCTCGAGGCACGCATGGTTGGTGATGGCACAAGCGCACAAGGAATGTTTTCTATTCTCAACTCAAGGGTCACTCCTGTTGACCTTTTGAAGACATACCAGGTTATTCTAACCGCCGTCCCTTTCAAGAAGTTTGCTTATTTCTTTGCAAATAAAATGATTAGGGAAGCAGCTGCCAAGGCAGAAACCGTCCATATTATTGATTTTGGCATCCTATATGGTTTTCATTGGCCAATGCTTATTAAGTTTTTATCAAATAGAGAAGGTGGACCTCCCAAGTTGAGGATCACAGGGATAGAGTTTCCTCTACCTGGCTTTCGTCCCACACAAAAAATTGAGGAAACGGGTCGCCATCTAGCTAACTATTGCAAACGTTACAATGTTCCCTTTGAGTACCATGCCATAGCATCAAAAAACTGGGAAACCATTCAGGTTGAAGCCCTTCAAATTGAGCGCAACGAGCTAGTTGCTGTGAACTCTCTCATGAGGTTTGAGAATTTACTGGATGAGACTTTTCATGAAAACAGTCCTAGAAATGCAGTACTGCATTTGATCAGGAAGATAAAACCGGATATTTTTACTCAGACCGTTATTAATGGGTCATTTAATGCTCCTTTCTTTACCACACGGTTCAGGGAGGCCCTCTTCCATTATTATACTCTTTATGATATGTGTGACGCTGTCGTACCTCGTGAAAATGAATGGAGGATGTTGATTGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGGATTGAGAGGCCTGAGACATACAAAAAGTGGTATATTAGAAACACGAGGGCTGGTTTCAAGCAGCTTCCACTGAATGAGGAATTAATGGAGAAATGCAGGAGTCAGTTAAGGGAATGGTACCACAGAGATTTTTTCGTAGATGAAGATAACGAGTGGATGCTTCAAGGTTGGAAAGGCAGAGTTTTGTATGCTTCCTCTTGTTGGGTTCCGGCATAG 1842 0.4267 MEANTPSDPWLEDNDFSETANFINQILMEENFDECPFYDSFTLQVTEKSFYDALTGTLPLSPTQNPLVLTPQAETTNKNDFSDENFRELKQRFQDSAFQFNPQVSQPHLDSSTATVMPHNKLNDGDYVCDFRRGLEEGRRFLPAGSNLVTLKGRKNHERHERDTIEEEEEGRSNKQSALSVADEIDLSEAIDRVSLSSENVCDEQSCFRSGGKGRPKKQGRNAWWMKKGKEKEIVDLRNLLLMCAQSVYANDNRTANEYLKQIRQNSSPTGDALQRLAHYFANGLEARMVGDGTSAQGMFSILNSRVTPVDLLKTYQVILTAVPFKKFAYFFANKMIREAAAKAETVHIIDFGILYGFHWPMLIKFLSNREGGPPKLRITGIEFPLPGFRPTQKIEETGRHLANYCKRYNVPFEYHAIASKNWETIQVEALQIERNELVAVNSLMRFENLLDETFHENSPRNAVLHLIRKIKPDIFTQTVINGSFNAPFFTTRFREALFHYYTLYDMCDAVVPRENEWRMLIEREIVGREAMNVIACEGSERIERPETYKKWYIRNTRAGFKQLPLNEELMEKCRSQLREWYHRDFFVDEDNEWMLQGWKGRVLYASSCWVPA 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00628 613 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 9 612 - -
Cca04g00628 613 MobiDBLite consensus disorder prediction 152 179 - -
Cca04g00628 613 MobiDBLite consensus disorder prediction 152 174 - -
Cca04g00628 613 ProSiteProfiles GRAS family profile. 228 611 IPR005202 -
Cca04g00628 613 Pfam GRAS domain family 237 610 IPR005202 -
Cca04g00628 613 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 612 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00628 Cca-Chr4 6225904 6227824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00628 6 612 GRAS Transcription Factor Family AT2G29060 45.171 1.61e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00628 GRAS 7.2e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00628 - - gmx:100795855 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00628 04 6225904 6227824 Cca04g00628 04 6225904 6227824 ECH
Cca10g00401 10 4172367 4174824 Cca04g00628 04 6225904 6227824 PCT