Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00627 ATGGTCAAAGGCAACGAATCCTTCATTGAGGATCCTTTGTTGGAGGACAACGACTTCTCAGAAACAGCCAAGTTCATTAACCAGATCCTCATGGAAGACAATGTTGATCAGAGCCCCTTCTATGATTCATCCACCTTGCAACTTACCGAAAAATCCTTCTACGATGCTCTCACTGGTACTCTACCTCTCTCTCCTAATCAGCACCCTCTTGTTCTCACTCCCGAAGGTGAAactaccaccaccaccaccaacaacaacaATTCTTTAGATGAAAATTTTCGCGAGTTGGAGCTCCCTTTTCTAGATTCTGCTATTCAGTTTAATCCCCACGCCCTTTCTCAACCACCTTCAGTTACTGTTTATTCTTCGAATGCCAAACTGATGTCACACAATATGTTCAACGATGCTGATTCTGTTTCCCAGTTTAGGAGAGGCTTGGAGGAAGCTAGTAGGTTTCTTCCTCCAGGATCTAACCTTGTAACCTTGAAGGGTACGTAA 498 0.4116 MVKGNESFIEDPLLEDNDFSETAKFINQILMEDNVDQSPFYDSSTLQLTEKSFYDALTGTLPLSPNQHPLVLTPEGETTTTTTNNNNSLDENFRELELPFLDSAIQFNPHALSQPPSVTVYSSNAKLMSHNMFNDADSVSQFRRGLEEASRFLPPGSNLVTLKGT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00627 165 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 159 - -
Cca04g00627 165 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 159 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00627 Cca-Chr4 6217262 6218707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00627 16 160 GRAS Transcription Factor Family AT2G29060 37.162 2.98e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00627 - - gmx:100795855 182.956