Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00626 atggaagaagaagaggaagaagggagaagtaacaagcaatcagcacttagtctTGCTGATGAGACTGACCTATCAGAGGCTATTGATCGGGTGTTTCTAAGCGACGAAAACGTGTGTATTGAACATTATTTGCAAAGTGGAGGGAAGGGTCGTTCTAAGAAAAAAGGGAGGAAGAAAGAAACAGTGGAGTTGAGGAATCTTCTGTTGATGTGTGCACAATCTATCTATGCCAATGACAACAGAACTACCAATGAATTGTTAAAGCAGATAAGGCAGCACTCTTCTCCCTTTGGCGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTCGAGGCACGCTTGGTTGGTGATGGGCTGATGGCACGAGTGCACAAGGAATGTTTTCTGTTTTGA 399 0.3885 MEEEEEEGRSNKQSALSLADETDLSEAIDRVFLSDENVCIEHYLQSGGKGRSKKKGRKKETVELRNLLLMCAQSIYANDNRTTNELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGLMARVHKECFLF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00626 132 ProSiteProfiles GRAS family profile. 55 132 IPR005202 -
Cca04g00626 132 Pfam GRAS domain family 64 120 IPR005202 -
Cca04g00626 132 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 125 - -
Cca04g00626 132 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 125 IPR005202 -
Cca04g00626 132 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00626 Cca-Chr4 6216832 6217230 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00626 2 120 GRAS Transcription Factor Family AT1G07530 45.000 6.49e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00626 GRAS 2.1e-13 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00626 - - gmx:100794790 174.096