Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00625 ATGGAAGCAGCTTCCAAGGCAGAAACCGTCCATATTATTGATTTTGGCATCCTATATGGTTTTCATTGGCCAATGCTTATTAAGTTTTTATCAAATAGAGAAGGTGGACCTCCCAAGTTGAGGATCACAGGGATAGAGTTTCCTCTACCTGGCTTTCGTCCCACACAAAAAATTGAGGAAATGGGTCGCCATCTAGCTAACTATTGCAAACGTTACAATGTTCCCTTTGAGTACCATGCCATAGCATCAAAAAACTGGGAAACCATTCAGGTTGAAGCCCTTCAAATTGAGCGCAACGAGCTAGTTGCTGTGAACTCTCTCATGAGGTTTGAGAATTTACTGGATGAGACTTTTCATGAAAACAGTCCTAGAAATGCAGTACTGCATTTGATCACTAATGGATCATATAATGCTCCTTTCTTTACCACACGGTTTAGGGAGGCAGTCTTCTATTTTTCTGCTATTTATGACATGTGTGACGCTGTCATAGCTCGTGAAAATGAATGGAGGATGTTGATTGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGCGAAGGGTGTGAAAGGATTGAGAGGCCCGAGACATACAAACAGTGGCATGTTAGGAACACTAGAGCTGGTTTCAAGCCGCTTCCACTGAATGAGGAATTAATGGAAAAATGTAGGAATCAGTTAAGGGAATATGGTACCACACAGATTTTTTCTTAG 720 0.4167 MEAASKAETVHIIDFGILYGFHWPMLIKFLSNREGGPPKLRITGIEFPLPGFRPTQKIEEMGRHLANYCKRYNVPFEYHAIASKNWETIQVEALQIERNELVAVNSLMRFENLLDETFHENSPRNAVLHLITNGSYNAPFFTTRFREAVFYFSAIYDMCDAVIARENEWRMLIEREIVGREAMNVIACEGCERIERPETYKQWHVRNTRAGFKPLPLNEELMEKCRNQLREYGTTQIFS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00625 239 Pfam GRAS domain family 2 233 IPR005202 -
Cca04g00625 239 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 233 - -
Cca04g00625 239 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 233 IPR005202 -
Cca04g00625 239 ProSiteProfiles GRAS family profile. 1 239 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00625 Cca-Chr4 6216008 6216727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00625 1 226 GRAS Transcription Factor Family AT1G07530 59.414 2.43e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00625 GRAS 4e-63 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00625 - - ccaj:109798374 400.593