Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00624 ATGGAAGACAACGActtctcagagaccgtcaagttcataagccacatcctcatggaagagagcgttgAACAAAGGCCATTCTATGATTCACTTTCCTTGCAACTTACCGAAAAATCCTTCTACCAAGCTCTCACCGGAAACCTACCTCTTGTGCACAGTCCCCAAGCTGAAACCAACTCCACCAACCACAACTTTTCAGATGAAACTTCGCTTTCTCCGCCACCTTCAGTTACTGTTACTCATGGACTCTCAATTTTCGATTCTTCCGTTGCCAAACTATTGTCACACAATACTTTCCATGATGCTGATCCCGTTTCCCAGTTTAGGAGAGGGTTGGAGGAAGCTACCAAGTTTCTTCCTCCAGGGACTAACCTTTTAACTGCTCTAGATTCAAATGGTGAACAACATCAACCAATCAACATGTTTGGACATAATTCCTATGGTTCCAAGAGTAGGAAGAATCACGAGCGCCAAGAGATACAAAACATAGAAGCAGAAGATGATGGTTACGAAGAAGGGAGAAGTAACAAGCAATCAGCACTTAGCCTTGTTGATGAGAGTGACTTGTCAGATGCGTTTGATCGGACGGTGTTGCTAAGTGTGGAAACCTTGTGTAGTGAACAAAGTTGTTTCCAAAATGGAGGGAAGGCTCGTCCTAAGAAACAAGAGAGGAACAAAGAAACAGTTGATATGAGGAATCTTCTGTTCATGTGTTCACAATCTGTGTATGCAAATGACaacataactgccaataaattgttaaagcagataaggcagcactcttctcccattggagacGCATCACAGAGGATGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCATGGTTGGTGATGGCAACACTGCACAAGGAATGTTTTCTATTCTCAACTCTAAGAAGAACACTGCTGCTGAGTTTCTCAAGGCACACCAGGTTTTTCTATCTGCCACCCCTTTCAAGAAGTTTACATATTTATTTGCAAATACAATGATTATGAAAGCAGCTGCCAAGGCAGAAACTGTTCATATTATTGATTTTGGCATCCTATATGGTTTTCAATGGCCAATGCTTATTAAGTTTTTATCAAATAGAGAAGGTGGACCTCCCAAGATGAGGATCACAGGGATAGAGTTTCCCCAACCTGGCTTTCGTCCCACACAAAAAAATGAGGAGACAGGTAGCCGTCTAGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAGTACCATGCCATAGCATCAAAGAATTGGGAAACCATTCAAGTTGAAGCCCTTCAAATTGAGAGCAGCGAGCTAGTTGTTGTGAACTCTCTTATGAGGTTTGAGAATTTACTCGATGAGACTGTTGAAGTGAACAGTCCTAGAAATGCAGTCCTGCATTTGATTAGGAAGATAAATCCGGATATTTTCACTCAGACCATTGTTAATGGATCATATAATGCTCCTTTCTTTACCACACGGTTTAGGGAGGCCCTCTTCCATTTTTCTACTATTTATGACCTGTGTGACACTGTCATACCTCGTGAAAACGAATGGAGGATGCTGATTGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCTGAGAGGGTTCAGAGGCCTGAGACATACAAACAGTGGAAGATTAGGAATACGAGGGTTGGTTTCAAGCAGCTCCCACTGAATGAGGAATTAGTGACCAAATTTAGGACTCTGTTAAGGGAATGGACTCATACTAGACTAAAGGTTCTGGTGGTATCCTGA 1764 0.3968 MEDNDFSETVKFISHILMEESVEQRPFYDSLSLQLTEKSFYQALTGNLPLVHSPQAETNSTNHNFSDETSLSPPPSVTVTHGLSIFDSSVAKLLSHNTFHDADPVSQFRRGLEEATKFLPPGTNLLTALDSNGEQHQPINMFGHNSYGSKSRKNHERQEIQNIEAEDDGYEEGRSNKQSALSLVDESDLSDAFDRTVLLSVETLCSEQSCFQNGGKARPKKQERNKETVDMRNLLFMCSQSVYANDNITANKLLKQIRQHSSPIGDASQRMAHYFANGLEARMVGDGNTAQGMFSILNSKKNTAAEFLKAHQVFLSATPFKKFTYLFANTMIMKAAAKAETVHIIDFGILYGFQWPMLIKFLSNREGGPPKMRITGIEFPQPGFRPTQKNEETGSRLANYCKRYNVPFEYHAIASKNWETIQVEALQIESSELVVVNSLMRFENLLDETVEVNSPRNAVLHLIRKINPDIFTQTIVNGSYNAPFFTTRFREALFHFSTIYDLCDTVIPRENEWRMLIEREIVGREAMNVIACEGSERVQRPETYKQWKIRNTRVGFKQLPLNEELVTKFRTLLREWTHTRLKVLVVS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00624 587 MobiDBLite consensus disorder prediction 52 76 - -
Cca04g00624 587 MobiDBLite consensus disorder prediction 163 182 - -
Cca04g00624 587 ProSiteProfiles GRAS family profile. 222 587 IPR005202 -
Cca04g00624 587 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 580 - -
Cca04g00624 587 Pfam GRAS domain family 231 577 IPR005202 -
Cca04g00624 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 580 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00624 Cca-Chr4 6210588 6212600 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00624 9 570 GRAS Transcription Factor Family AT1G07530 44.512 1.13e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00624 GRAS 4.5e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00624 - - ccaj:109798374 1160.59