Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00623 ATGCATGGGGTTGTCAATGGCACATACAATGCACCATTTTTCCTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCAGCATTGTTTGATATGTTTGAAGCTAATGTGCCACGTGAAGATCCATCAAGACTTATGTTTGAAAAAGGGTTGTTTGGAAGGGATGCGATCAATGTGATAGCATGTGAGGGAGCAGAGAGGTTTGAAAGGCCAGAGACCTACAAGCAGTGGCAGGTTAGGAACCAGAGAGCAGGGTTCAAGCAACTTCCATTGGCACCAGATCTTGTGAATAGAGTGAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTGTAGTTGATGAAGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGACGTATTCTTTTTGCTACTACTTCTTGGGTTCCAGCTTGA 414 0.4372 MHGVVNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKGLFGRDAINVIACEGAERFERPETYKQWQVRNQRAGFKQLPLAPDLVNRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILFATTSWVPA 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00623 137 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 136 IPR005202 -
Cca04g00623 137 ProSiteProfiles GRAS family profile. 1 135 IPR005202 -
Cca04g00623 137 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 136 - -
Cca04g00623 137 Pfam GRAS domain family 7 134 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00623 Cca-Chr4 6203254 6203667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00623 1 137 GRAS Transcription Factor Family AT1G07520 61.594 5.38e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00623 GRAS 9.3e-37 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00623 - - ccaj:114915909 288.885