Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00622 ATGATTTCCACGGATTCCCTTTTGGAAAATTTTCCTGGTTCCGTGAATGGATTTCTATTTGAAAATGGTCCTGTTTCGGTATTCTCGAATCAGAATCCTGAAAGTGGGTTCAAGTTCGAtgattcatgttccccttcagaatctgccactgattctggtcctgcttctgGGACAAGCTCAAATGGAGAACATGCTGAGAGTACTAAACATTCCAATCCAATTCTCAGATACATAAGCGATATCCTCATGGAGGAAGAGGATGATTTAGAGCGCAAACCTTGCATGTTGCAAGATTGTTTGAGGCTCCAGGCTGCTGAAAAATCCTTCTATGATGCACTGGTTCAAAGCCACCCTTCATCACCCCATGAATTCCGTGATGATAACCCTGACCCAGATGATAATTTTGCTGGAAGTGGAACCACTAGTTCTGAGAGTTATAGCAGTTATACCACTGATAATTCATGTGACTCTGATTGGTTTAATGGTTCTGGTGACTTTGAGGCTTCTTTCCTACAAAGATCTCTGATTGATCCGTTTAGAGAGACACAAGCAGTGGTCCATTTATCAAATGGAGCCTGGAATACGATCCAATCTCGGAACATGCCTCGCGTGTTTGAAGAGGGTGTGATGCATGGTTCTATGACAGCTAGAGGATCAAGGGAGAAGAGAAGCCATCTGATGAATGATATCTCACATGAAGAAGAAGAGAGAAGCACCAAGCTTTCAGCTGTCTCCTCTGATGATTCAGAGCCATCTAGCCTGTTTGATGAGGTGCTGCTTTGCAAGGATGGCAAGAGTCCGGCCATTTTTTATGCTGACCGTGAACCATCGTCAGCACAGATTGCTGACTCGGGTGCGAAGACAACGCGTTCGAAGAAAGGTTCCAACAAGGGGACAAGAGCAAGTACAACAGTGGACTTGTGGACTTTGCTAACTCAATGTGCACAGGCTGTGGCTAGCTATGACCAAAGGACTGCAAATGAAATTCTCAAGCAGATTAGGCAGAACTCTTCACCATTTGGCGATGGACTTCAGCGGTTGGCTCATTACTTTGCTGACGGCCTTGAGACACGCATCGCCATTTCATAG 1089 0.4288 MISTDSLLENFPGSVNGFLFENGPVSVFSNQNPESGFKFDDSCSPSESATDSGPASGTSSNGEHAESTKHSNPILRYISDILMEEEDDLERKPCMLQDCLRLQAAEKSFYDALVQSHPSSPHEFRDDNPDPDDNFAGSGTTSSESYSSYTTDNSCDSDWFNGSGDFEASFLQRSLIDPFRETQAVVHLSNGAWNTIQSRNMPRVFEEGVMHGSMTARGSREKRSHLMNDISHEEEERSTKLSAVSSDDSEPSSLFDEVLLCKDGKSPAIFYADREPSSAQIADSGAKTTRSKKGSNKGTRASTTVDLWTLLTQCAQAVASYDQRTANEILKQIRQNSSPFGDGLQRLAHYFADGLETRIAIS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00622 362 MobiDBLite consensus disorder prediction 229 250 - -
Cca04g00622 362 MobiDBLite consensus disorder prediction 31 70 - -
Cca04g00622 362 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 27 360 - -
Cca04g00622 362 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 360 IPR005202 -
Cca04g00622 362 MobiDBLite consensus disorder prediction 116 149 - -
Cca04g00622 362 MobiDBLite consensus disorder prediction 280 300 - -
Cca04g00622 362 MobiDBLite consensus disorder prediction 134 149 - -
Cca04g00622 362 MobiDBLite consensus disorder prediction 281 300 - -
Cca04g00622 362 Pfam GRAS domain family 309 360 IPR005202 -
Cca04g00622 362 MobiDBLite consensus disorder prediction 229 243 - -
Cca04g00622 362 ProSiteProfiles GRAS family profile. 298 362 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00622 Cca-Chr4 6198949 6200123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00622 71 360 GRAS Transcription Factor Family AT2G29060 35.473 2.22e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00622 GRAS 3.3e-13 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00622 - - gmx:100815586 563.148