Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00620 ATGAATTCGGAAACGCAACACGGAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTCGTCCACCTCTCCGCGCACCCCACCGTCGCCTGCCCCCACTGCCAGACAGGCTTCGTCGAAGAGATCCGACCACCCGCCGACGCCTCCCCGCGCCACCGCCTCAGCCCTTTCCCCGACCACGACCCGCTTTCTCTCCGCCGTCAGGGCTTCCGCCGCCGCCGCCGAGACGCCGCCAACCGCTCCCCCTTCAACCCTGTCATCGTCCTCCGCGGCCCCGCCGACGACGCCGACCAGGATGCCGCCGCCGCCTCCTCCTTCGAGCTGTTTTACGACGACGGCGACGGCTCCGGCCTCCGCCCCCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTCGACCGCCTCCTGGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAATCCGCCGGCGTCGAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAGGCGCTGGTCCAAACCGACGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGCTTCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATCTACCACTCCGATTGCATTCTCCCGTGGCTCTCCATGCGCAACTCGTGCCCCGTGTGCCGCCACGAGCTTCCCTCCGATTTGGAAACTAGGGTTCCGAGCCAGATCGACGAGGAGGCCATAGGGTTAACGATTTGGAGGCTCCCCGGCGGGGGATTCGCCGTGGGGAGATTCTCCGGCGGTCGTAGGGGCGGCGATAATCACTTCCCGGTGGTGTACACGGAGATGGACGGCGGGATGAACGCGAACGGTGCTCCGAGGAGAATTTCTCGGTCGGTGAGAAGCAATAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTATTCGCAATTTCTTTTCATTCTTTGGAAGAATCGGTTCTAGGAACTCTTCTGAACATGGGTCCGTGAGTAGAAGCCGTAGCCAAGTGAGTTCATTGTTCAATAGAAGCTCGCGGAGCCATAGCAGGACTTGGGTCTTGGATTGA 1068 0.632 MNSETQHGTASYWCYSCTRFVHLSAHPTVACPHCQTGFVEEIRPPADASPRHRLSPFPDHDPLSLRRQGFRRRRRDAANRSPFNPVIVLRGPADDADQDAAAASSFELFYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEALVQTDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRGGDNHFPVVYTEMDGGMNANGAPRRISRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSEHGSVSRSRSQVSSLFNRSSRSHSRTWVLD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00620 355 Pfam Ring finger domain 180 222 IPR001841 -
Cca04g00620 355 CDD RING-H2_RNF126_like 181 222 - -
Cca04g00620 355 PANTHER OS05G0110000 PROTEIN 9 305 - -
Cca04g00620 355 Pfam Protein of unknown function (DUF1117) 242 346 IPR010543 -
Cca04g00620 355 MobiDBLite consensus disorder prediction 45 66 - -
Cca04g00620 355 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Cca04g00620 355 SMART ring_2 181 221 IPR001841 -
Cca04g00620 355 MobiDBLite consensus disorder prediction 45 77 - -
Cca04g00620 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 305 - -
Cca04g00620 355 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Cca04g00620 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
Cca04g00620 355 SUPERFAMILY RING/U-box 161 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00620 Cca-Chr4 6153889 6156415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00620 120 228 C3H Transcription Factor Family AT5G01980 46.789 4.60e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00620 - - gmx:100792874 567