Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00618 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGCTTTCCAGAATATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGACCAGTTAATGGCAATTCTCTAGCTTTTCTTATCACGGTTATTTTGATATTCATGATATTAAACTCCCCTCAAATGTTACATCATTTTTTGCTCTGGGCTGTACTGGCTATCTTTGTGATGGCTACGAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATACTGAACTCCGTCTTCACATGCCACCATCGATTGCAATTGCAACCAGAGGAAGATTGCAAGGACTTAGACTTCAACTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGAGACTGCTTCTAGCACTCGTTCAATGACTGAGGAAGAGATAAATGCTTTGCCTATTCACTCATATAAAGTTCCTGTCCCACCCAAAGATGGCTCAGCTGGTTTGGCATCCTCTTCAGGTGCAGCTGAGATAAAGCAAGAATCTGGAGGCACAGAGACAGGTATCAAAGTTCCCGAAGATGAGCTGACGTGTACTATTTGCTTGGACCAAGTGAAGAGGGGGGAGCTTATTCGTAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGGTAGTGGGGGTAACAGGGAGAGCGATTCTGATGGTTCAGATATTGCGTAG 825 0.4606 MSFVFRGSRGDIESGFPEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFLLWAVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSETASSTRSMTEEEINALPIHSYKVPVPPKDGSAGLASSSGAAEIKQESGGTETGIKVPEDELTCTICLDQVKRGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSGSGGNRESDSDGSDIA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00618 274 Pfam Ring finger domain 211 253 IPR001841 -
Cca04g00618 274 SMART ring_2 212 252 IPR001841 -
Cca04g00618 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Cca04g00618 274 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 273 - -
Cca04g00618 274 CDD RING-H2_PA-TM-RING 211 253 - -
Cca04g00618 274 SUPERFAMILY RING/U-box 207 257 - -
Cca04g00618 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 259 IPR013083 -
Cca04g00618 274 MobiDBLite consensus disorder prediction 178 202 - -
Cca04g00618 274 PANTHER TARGET OF ERK KINASE MPK-1 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00618 Cca-Chr4 6141154 6144653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00618 1 274 C3H Transcription Factor Family AT3G55530 68.592 3.48e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00618 K16283 - gmx:100805406 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00618 04 6141154 6144653 Cca04g00618 04 6141154 6144653 ECH