Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00609 ATGGGGGAAGAGGTGAAGACCAGCGAGTACGAGGAAGAGCGCGTCATCGAGTGGGAGATTGGCCTCCCCAACGCCAACGATCTCACGCCTCTCTCGCAGCCCCTCATCCCGCCGGAGCTCGCCTCCGCCTTCAGCATCACGCCCGAGCCCCACCGCACGCTCCTCGACGTCAACCGCGCCTCCCGCAACACGTTCTCCACGCTCCGCGGCGGGGCCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCGCCACCGcgacgacgacgaagaggacgacgacgacgacgacgaGGAGTACGGCGAGGGGTCCGATTCGCGGAAGCAGCGGAGGATCGAGTGCGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGGAGCGGGCGGCGGTGAAGCGGCCGCGGCTGGTGTGGACGCCGCAGCTGCACAAGCGGTTCGTGGATGTGGTGGCGCACCTCGGAATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACTCGCGAGAATGTGGCGAGTCATCTCCAGAAGTATCGGCTATACTTGAAGCGGATGCAGGGTCTGTCGAACGAGGGTCCTTCTTCTTCCGCTTCGTTGTTCGCTTCGACGCCT 627 0.6108 MGEEVKTSEYEEERVIEWEIGLPNANDLTPLSQPLIPPELASAFSITPEPHRTLLDVNRASRNTFSTLRGGAVHQAFSSSNNHRHRDDDEEDDDDDDEEYGEGSDSRKQRRIECAEEADSAVRTEERAAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSASLFASTP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00609 209 Gene3D - 129 191 - -
Cca04g00609 209 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 207 IPR044841 GO:0003700|GO:0006355
Cca04g00609 209 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Cca04g00609 209 MobiDBLite consensus disorder prediction 68 128 - -
Cca04g00609 209 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 207 - -
Cca04g00609 209 MobiDBLite consensus disorder prediction 102 128 - -
Cca04g00609 209 SUPERFAMILY Homeodomain-like 130 189 IPR009057 -
Cca04g00609 209 Pfam Myb-like DNA-binding domain 136 184 IPR001005 -
Cca04g00609 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 188 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00609 Cca-Chr4 6043579 6044205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00609 1 209 G2-like Transcription Factor Family AT3G46640 60.965 3.78e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca04g00609 Myb_DNA-binding 6.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00609 - - gmx:100816634 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00609 04 6043579 6044205 Cca04g00609 04 6043579 6044205 ECH