Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00601 ATGGAGTCTGATCTTAATCATCAAGCTGCACCATCAGAAAATTCCACTGAGGGTGAGGATCAAGGTGCAAGTCACGTGACATCAAGGTCCTATGAGTGCAACTTCTGCAGGAGGGGGTTCTCTAATGCACAAGCACTAGGGGGACACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAaacagcagcagcaacaacaacaacaaTCTTCAATTTCAAACCAAACTGAACCATCTTTGGACAAGGTCATTCCGCAGGATCAAGCCATGTCTGGTGAAGCAAATTGGAATTGGAATGTGTCATCTCAACAAGAACACGCCTCCTCCAGAGCCATTCACACGAAGCAGCTTCCACTCTTTGCAGAATCACCAACTAGCAGTGAAACGCAAAATTCGCCACTAGGTCAAACTACTACTGAACAGACTTTGTTACCTAGACAAGATTCTTCATCGGAGGAGTTAGACCTTGAACTGAGACTAGGACCTGAACCACAGGATCCATCAGAAACGGGTACAAGAAATTTTTTTTGA 531 0.4275 MESDLNHQAAPSENSTEGEDQGASHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQQQQQQSSISNQTEPSLDKVIPQDQAMSGEANWNWNVSSQQEHASSRAIHTKQLPLFAESPTSSETQNSPLGQTTTEQTLLPRQDSSSEELDLELRLGPEPQDPSETGTRNFF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00601 176 MobiDBLite consensus disorder prediction 119 149 - -
Cca04g00601 176 Gene3D Classic Zinc Finger 13 92 - -
Cca04g00601 176 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 168 - -
Cca04g00601 176 MobiDBLite consensus disorder prediction 90 111 - -
Cca04g00601 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Cca04g00601 176 PANTHER OS07G0101800 PROTEIN 1 168 - -
Cca04g00601 176 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Cca04g00601 176 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Cca04g00601 176 MobiDBLite consensus disorder prediction 47 176 - -
Cca04g00601 176 MobiDBLite consensus disorder prediction 1 28 - -
Cca04g00601 176 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00601 Cca-Chr4 5987779 5988614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00601 10 161 C2H2 Transcription Factor Family AT3G09290 33.540 9.14e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00601 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00601 - - vun:114170729 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00601 04 5987779 5988614 Cca04g00601 04 5987779 5988614 ECH