Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00597 ATGGAACATGAGGAAGCCCCTATCTTGGAAGAAAGGGCTATGCAGGAAATTGAGATACCCATTGCCTCTGAAAGACTTGATATTCTTCCTATGAAGGCAGAATCATCTTGTAGTTCTGTTTGTTCTTTTTCCAGACATGAAAACAGTGTTGTAGCATCAAAGGAGTCGTCAAAGTCAGCGAAGAAGCTTTCTGGACTCATTGTTTTCTATACCATTGTTATGGTTGTGGAAATTATTGGTGGATTAAAAGCTCACAGCCTAGCTGTCATCAGTGATGCAGCACACTTGCTTTCTGATATTGCTGGATTCTCTATCTCTCTCTTTGCAGTATGGGCTTCAGGTTGGGAGGCAACACCGCATCAATCTTTTGGATACAATCGTCTTGAGGTTTTGGGGGCTCTTATATCTGTGCAGTTAATTTGGTTGATATCTGGTTTTTTAATATATGAAGCAGTTGGTAGACTTGTTCTCCAAAATGCCAGTGTGAATGGAAAGCTCATGCTTGCTATTGCAACACTTGGGTTTGTTCTAAACTTTATCATGGTTGCATGGATtggtcacgatcatagtcatcatcatcatggctgtcaaaactcaggtcatgatcatagtcatcaacaatgccatgcagatcatgatcatgGGAAGGAGGAACTATCTACAATAACTGATGAGGAGAGTGTTACCCTGGTTTCAAGTAGTCAGAGAAATACTAATGTGTTGAACATAAATCTCCAGGGGGCGTATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGCGGGAGCCATAATATGGGCTCAACCGGAGTGGTTTATAGTTGACCTTGTGTGTACTCTTATATTTTCTGTTTTATCTTTAAGTACTACTCTTCCCATGCTTAGGAATATTTATGGCATTCTGATGGAAAGGACTCCAAGTGAGATCGATATCAGTAAACTGGAAAATGGCCTCAGAAATATAAAGGGAGTGCAGGATGTTCATGACTTGCATGTTTGGGCTATAACCATTGGAAAATATGTTCTGTCTTGCCACATAGTGGCTGAATCTGGCACCAGTTCCATTGATTTAATAGGCACGATTAAACATTACTGTGAACAAACATATCAAATACAACATGTAACCATACAAATTGAGTAA 1152 0.3655 MEHEEAPILEERAMQEIEIPIASERLDILPMKAESSCSSVCSFSRHENSVVASKESSKSAKKLSGLIVFYTIVMVVEIIGGLKAHSLAVISDAAHLLSDIAGFSISLFAVWASGWEATPHQSFGYNRLEVLGALISVQLIWLISGFLIYEAVGRLVLQNASVNGKLMLAIATLGFVLNFIMVAWIGHDHSHHHHGCQNSGHDHSHQQCHADHDHGKEELSTITDEESVTLVSSSQRNTNVLNINLQGAYLHVMADMIQSIGVMIAGAIIWAQPEWFIVDLVCTLIFSVLSLSTTLPMLRNIYGILMERTPSEIDISKLENGLRNIKGVQDVHDLHVWAITIGKYVLSCHIVAESGTSSIDLIGTIKHYCEQTYQIQHVTIQIE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00597 383 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 383 - -
Cca04g00597 383 TIGRFAM CDF: cation diffusion facilitator family transporter 63 383 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca04g00597 383 SUPERFAMILY Cation efflux protein transmembrane domain-like 61 307 IPR027469 -
Cca04g00597 383 Gene3D Cation efflux protein transmembrane domain 60 305 IPR027469 -
Cca04g00597 383 Pfam Cation efflux family 67 306 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca04g00597 383 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 383 IPR036837 -
Cca04g00597 383 PANTHER METAL TOLERANCE PROTEIN B 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00597 Cca-Chr4 5950570 5952589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00597 1 383 Inorganic Solute Cotransporters AT2G29410 48.964 3.32e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00597 K14689 - gmx:100777590 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00597 04 5950570 5952589 Cca04g00597 04 5950570 5952589 ECH