Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00582 ATGCTTGAAGATGATAGGGTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCAGTGGGGCAGCTAAGGAATGAGCGTTTAGCTAACTTGGTTGGATGTTGCTGTGAGGGGGAGGAGAGATTGCTTGTGGCAGAGTTCATGCCTAATGAAACACTCTCCAAACATCTTTTTCACTGGGAAAGCGAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAGGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGACCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTACAGTACGAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGGATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTGCTTGATCTTCTGAGTGGAAAGCATATCCCTCCCAGTCATGCACTTGACCTTATACGAGGTAAAAATTTTCTGATGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGATGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTTGTGACTGCTCTATCCTCTCTTCAGAAAGAAACTTCGATACCGTCAAATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTGACACCTTTCGGTGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAAGGTGGCATACAAGGATGATGAAGATGTTGCAAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCAAAGGCCATTGACTGCTATACACAGTTTATCGACGGTGGAACCATGATATCACCAACCGTGTATGCCAGGCGCTGCTTATGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCGCCTGGCCAACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAACCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGCACAACACTCGAAACCAGGAAGTATAGAAATTGA 1248 0.4375 MLEDDRVVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESEPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALSSLQKETSIPSNVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAIHEILEKVAYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSKAIDCYTQFIDGGTMISPTVYARRCLCYLMNDMAQEALGDAMQAQSISPAWPTAYYLQAAALFNLGMDNDAQESLKDGTTLETRKYRN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00582 415 SUPERFAMILY TPR-like 314 405 IPR011990 GO:0005515
Cca04g00582 415 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 2 415 - -
Cca04g00582 415 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00582 415 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 415 IPR045845 GO:0004672|GO:0009742
Cca04g00582 415 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Cca04g00582 415 SUPERFAMILY Protein kinase-like (PK-like) 5 240 IPR011009 -
Cca04g00582 415 Pfam Protein tyrosine and serine/threonine kinase 5 234 IPR001245 GO:0004672|GO:0006468
Cca04g00582 415 Gene3D Tetratricopeptide repeat domain 308 414 IPR011990 GO:0005515
Cca04g00582 415 Gene3D Transferase(Phosphotransferase) domain 1 60 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00582 Cca-Chr4 5847622 5851610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00582 7 237 Glycoside Hydrolase AT3G07070 34.884 2.02e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Cca04g00582 PK_Tyr_Ser-Thr 8.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00582 - - gmx:732542 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00582 04 5847622 5851610 Cca04g00582 04 5847622 5851610 ECH