Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00580 ATGGCTGGGTATTTGAACAAATATGGTCTCATTTCTTGGTTCAGTCAAACTGTAGTCAAGTTTGTCGGTGGATTGGGTCTATCATGGCAACTATCTTTTGGAATTCTGGTCCTTCTCTACTTTTACTCTCATTACTTCTTTGCAAGTGGAGCTGCTCATATTGGTGCCATGTTTACTGCATTTTTGTCTGTTGCCACTGCTCTGGGGACTCCGCCATTCTTTGGAGCCATAGTGCTGTCCTTCCTCTCCAACCTTATGGGTGGCCTTACTCATTATGGAATTGGATCAGCTCCAGTGTTTTTCGGTGCCAACTACGTTCCTCTTGCTAAATGGTGGGGCTATGGATTCGTCATTAGCATTGTTAACATTATAATCTGGCTTGGACTTGGAGGAGTATGGTGGAAATTCATTGGCTTGTGCTGTTTCCAAGGAAATTTCCTTTCAACTTCCTCTGGAAGTGAGATAGTGGTTTTCTAA 477 0.4319 MAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVATALGTPPFFGAIVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFVISIVNIIIWLGLGGVWWKFIGLCCFQGNFLSTSSGSEIVVF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00580 158 Pfam Sodium:sulfate symporter transmembrane region 1 138 IPR001898 GO:0016020|GO:0022857|GO:0055085
Cca04g00580 158 PANTHER DICARBOXYLATE TRANSPORTER 1, CHLOROPLASTIC 1 139 - -
Cca04g00580 158 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 1 139 IPR030676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00580 Cca-Chr4 5831476 5840270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00580 1 139 Antiporters AT5G12860 90.647 9.13e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00580 - - gmx:100796365 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00580 04 5831476 5840270 Cca04g00580 04 5831476 5840270 ECH