Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00578 ATGAGGAAGCCCGAGGCAGCATCTGGAAATAACAACAAGCTTAGAAAGGGGTTGTGGTCACCCGAAGAAGATGACAAGCTCATGAACTACATGATGAACAGTGGACAAGGTTGTTGGAGTGATGTGGCAAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCTTTCTCACCACAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGAAACAGGTTGCCTATGCTAGAGCATGGACTGAACATGCCAGCTTCTGGTGGTGGATTCTTCAATGGCACAGGGCCATGCTTCTCACAAAGTGGAATTGATCACAACAAAGGCTTATATTTGGAAAATGGAGGAATATTTGGGAGTGTAAATATTGGGGCAGAAGGGGAAATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCCTTAATAATTGCAATAATAGGGCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAACTGA 675 0.4281 MRKPEAASGNNNKLRKGLWSPEEDDKLMNYMMNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRLPMLEHGLNMPASGGGFFNGTGPCFSQSGIDHNKGLYLENGGIFGSVNIGAEGEMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILNNCNNRAGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00578 224 PANTHER MYB DOMAIN PROTEIN 55 8 90 - -
Cca04g00578 224 SMART sant 15 65 IPR001005 -
Cca04g00578 224 PANTHER MYB TRANSCRIPTION FACTOR 89 223 - -
Cca04g00578 224 Gene3D - 13 69 - -
Cca04g00578 224 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Cca04g00578 224 CDD SANT 19 63 IPR001005 -
Cca04g00578 224 PANTHER MYB TRANSCRIPTION FACTOR 8 90 - -
Cca04g00578 224 Pfam Myb-like DNA-binding domain 19 78 - -
Cca04g00578 224 PANTHER MYB DOMAIN PROTEIN 55 89 223 - -
Cca04g00578 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Cca04g00578 224 SUPERFAMILY Homeodomain-like 18 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00578 Cca-Chr4 5819503 5822018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00578 1 90 MYB Transcription Factor Family AT5G12870 76.596 7.13e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca04g00578 Myb_DNA-bind_6 8.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00578 K09422 - gmx:100786151 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00380 10 4009371 4012087 Cca04g00578 04 5819503 5822018 PCT