Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00578 | ATGAGGAAGCCCGAGGCAGCATCTGGAAATAACAACAAGCTTAGAAAGGGGTTGTGGTCACCCGAAGAAGATGACAAGCTCATGAACTACATGATGAACAGTGGACAAGGTTGTTGGAGTGATGTGGCAAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCTTTCTCACCACAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGAAACAGGTTGCCTATGCTAGAGCATGGACTGAACATGCCAGCTTCTGGTGGTGGATTCTTCAATGGCACAGGGCCATGCTTCTCACAAAGTGGAATTGATCACAACAAAGGCTTATATTTGGAAAATGGAGGAATATTTGGGAGTGTAAATATTGGGGCAGAAGGGGAAATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCCTTAATAATTGCAATAATAGGGCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAACTGA | 675 | 0.4281 | MRKPEAASGNNNKLRKGLWSPEEDDKLMNYMMNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRLPMLEHGLNMPASGGGFFNGTGPCFSQSGIDHNKGLYLENGGIFGSVNIGAEGEMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILNNCNNRAGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSN | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00578 | 224 | PANTHER | MYB DOMAIN PROTEIN 55 | 8 | 90 | - | - | |
Cca04g00578 | 224 | SMART | sant | 15 | 65 | IPR001005 | - | |
Cca04g00578 | 224 | PANTHER | MYB TRANSCRIPTION FACTOR | 89 | 223 | - | - | |
Cca04g00578 | 224 | Gene3D | - | 13 | 69 | - | - | |
Cca04g00578 | 224 | ProSiteProfiles | Myb-like domain profile. | 11 | 63 | IPR001005 | - | |
Cca04g00578 | 224 | CDD | SANT | 19 | 63 | IPR001005 | - | |
Cca04g00578 | 224 | PANTHER | MYB TRANSCRIPTION FACTOR | 8 | 90 | - | - | |
Cca04g00578 | 224 | Pfam | Myb-like DNA-binding domain | 19 | 78 | - | - | |
Cca04g00578 | 224 | PANTHER | MYB DOMAIN PROTEIN 55 | 89 | 223 | - | - | |
Cca04g00578 | 224 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 11 | 67 | IPR017930 | - | |
Cca04g00578 | 224 | SUPERFAMILY | Homeodomain-like | 18 | 91 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00578 | Cca-Chr4 | 5819503 | 5822018 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00578 | 1 | 90 | MYB Transcription Factor Family | AT5G12870 | 76.596 | 7.13e-48 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Cca04g00578 | Myb_DNA-bind_6 | 8.4e-13 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00578 | K09422 | - | gmx:100786151 | 241.121 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca10g00380 | 10 | 4009371 | 4012087 | Cca04g00578 | 04 | 5819503 | 5822018 | PCT |