Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00574 ATGGAGATGATGCCAACTTTGGAGAGTGACCTGAATAACATGAGGGACTATTATGAGAGTGGAAACACTAAGGATGCGTCATGGAGAGAATCTCAGCTCAAAGGGTTGCATCGTTTCCTCATGGAAAAACAGGACCATATCATGAATGCCCTCATGCAAGATCTAGGAAAACATCAACTTGAAGCTTTCAGAGACGAGATAGGAACGTTGATCAAGACCTTAAATCTGGCATTGAAGTCTTTGAAAGATTGGATGTCAGGCAAAAAGGCTAAGTTGCCGCAAATAGCATTGCTCACTAGTGCAGAAATAGTTCCCGAGCCACTTGGTTTGGTCCTCATTATTTCATCATGGAATTTCCCCTTTGGACTATCCTTGGAGTCACTGATAGGAGCAGTAGCTGCGGGAAACGCAGCAGTGTTAAAGCCTTCAGAGTTGTCACCAGCATGTTCTTCTCTACTTGCTTCTGGTCTTGCCACTTACTTGGACAATAAAGCCATTAAGGTGGTTCAAGGTGGACCTCAAGAGACTCAGCAACTACTACAGCAAAAATGGGACAAAATCTTCTTCACAGGAAGTTCACATGTGGGGAGGATTGTGATGGCTGCTGCTGTGAAGCACCTGACTCCTGTGACTTTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTTGATTCTCTCTCATCTTCGTGGGATTTAGGAGTGACAGTGAAGAGAATTATTGTGGGAAAATTTGGGACTTGTGCTGGTCAAGCATGCATAGCTATTGATTATGTCATTGTGGAAAAGGAGTACTGTTTAAAACTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTATGGAGAGAACCCACAACGTTCCAAAACTATTGCCAGAATAGTCAATAAACACCACTTCTCTAGATTGAAGAATCTCCTTGACGATGAAAACGTCAAAGAATCTGTGGTTTATGGTGGTTCAACGGACGAAAAGAACTTATTTATTGAGCCAACGATCTTGGTGAATCCCCCGCCGGAAGCAGCAATTATGTCGGAGGAAATTTTTGGCCCATTACTTCCAATTATTACTGTGGAGAAGATTGAGGAGAGTATTAAATTCATAAATTGTAGACCTAAGCCTCTTGCCCTTTATGTTTTCACCAAAAACCAAACACTGCAGAGAAGAATGATATCTGAAACATCATCTGGAAGTGTGACTTTCAATGATGCAATTCTACAATATGCAGCTGATTCTCTTCCATTTGGAGGAGTTGGTGAAAGTGGGTTTGGGATGTACCATGGAAAGTTCTCCTTTGACACATTTAGCCACCAGAAAGCAATTGTGAGAAGAAGTTTCCTCACTGATTTTTGGTTTAGATATCCTCCATGGACACTAAATAAGTTACAACTACTTGAAGTCTCTTACAACTATGATTATCTGGGATTGCTCCTTGTCCTTCTCGGATTAAAAAGACCATCAAAACGCTTAATCTTGGATCAAATTTAG 1482 0.4157 MEMMPTLESDLNNMRDYYESGNTKDASWRESQLKGLHRFLMEKQDHIMNALMQDLGKHQLEAFRDEIGTLIKTLNLALKSLKDWMSGKKAKLPQIALLTSAEIVPEPLGLVLIISSWNFPFGLSLESLIGAVAAGNAAVLKPSELSPACSSLLASGLATYLDNKAIKVVQGGPQETQQLLQQKWDKIFFTGSSHVGRIVMAAAVKHLTPVTLELGGKCPAVVDSLSSSWDLGVTVKRIIVGKFGTCAGQACIAIDYVIVEKEYCLKLVELMKVWIKKMYGENPQRSKTIARIVNKHHFSRLKNLLDDENVKESVVYGGSTDEKNLFIEPTILVNPPPEAAIMSEEIFGPLLPIITVEKIEESIKFINCRPKPLALYVFTKNQTLQRRMISETSSGSVTFNDAILQYAADSLPFGGVGESGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWFRYPPWTLNKLQLLEVSYNYDYLGLLLVLLGLKRPSKRLILDQI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00574 493 Pfam Aldehyde dehydrogenase family 23 439 IPR015590 GO:0016491
Cca04g00574 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 437 IPR016162 GO:0016491
Cca04g00574 493 PANTHER ALDEHYDE DEHYDROGENASE 7 488 - -
Cca04g00574 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 419 IPR016163 GO:0016620
Cca04g00574 493 PANTHER ALDEHYDE DEHYDROGENASE 7 488 IPR012394 GO:0006081
Cca04g00574 493 PIRSF ALDH 1 475 IPR012394 GO:0006081
Cca04g00574 493 SUPERFAMILY ALDH-like 13 456 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00574 Cca-Chr4 5782406 5785153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00574 3 483 Aldehyde Dehydrogenase Gene Family AT4G36250 53.638 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00574 K00128 - gmx:100817701 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00574 04 5782406 5785153 Cca04g00574 04 5782406 5785153 ECH
Cca10g00378 10 3988427 3991812 Cca04g00574 04 5782406 5785153 PCT