Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00573 ATGGTGTCGACGGCGATTGAGGAAGTGCGAACACTGTGGATTGGGGATTTGCAGTATTGGGTGGACGAGTCGTATCTGTCTCAGTGCTTCGCACACAGCGGCGAAGTGGTTTCCATAAAAATCATACGCAACAAGGTGACGGGGCAACCCGAGGGGTACGGCTTCGTCGAGTTCGTCTCGCACGCCGCCGCCGAAGCCTTTCTCCGCACCTACAACGGCACGCAAATGCCCGGAACGGAACAGACCTTCCGCCTCAATTGGGCCTCCTTCGGCGACGCTGGGCCCGACCACTCCATCTTTGTCGGCGATCTCGCGCCCGACGTCACCGATTTCCTCCTCCAGGAGACCTTTCGGGCCCATTATCCCTCCGTTAAAGGGGCCAAAGTGGTCACCGACCCCGTCACGGGCCGCTCCAAGGGTTACGGCTTCGTTAAGTTCGCGGATGAGGCCCACAGGAACCGCGCCATGACTGAGATGAACGGCGTTTATTGCTCCACTCGCCCTATGCGTATCAGCGCTGCTACGCCTAAGAAATCCACTTCTTTTCAACACCAATATGCTCCGCCTAAAGCAATATATCAATATCCTGCGTACACTGCTCCGGTGAATACTGTTGCCCCGGAAAATGATGTGAACAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGGCGGAGGAGGAGCTTAAGCAAGCGTTTGTGCAATTCGGGGAGATTGTGTCGGTCAAAATTTATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGAACTAGAGCTTCTGCTGAAGATGCCATTCAGAGGATGCAGGGGAAGATGATAGGTCAACAAGTGATCCAGATTTCTTGGGGTAGTAACTTGACAGCTAGACAGGACGTACCTGGTGGCTGGGGCGCACAGACGGATCCAAATCAATGGAGTGCCTACTATGGATATGGACAAGGTTATGAAGCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCGTATGGTGCATATGCTGGTTTTGCACAATATCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTGTGCCAATGGAGGAGTCGTATGACCCCCTGGCAATGCCTGATGTTGACAAATTAAATGCTGCATATCTTTCAATACATGGAAATGCCATTTTGGGACGGTCCCTTTGGCAGACGACCTCGCAATCTTTACAGCAAGCCTAG 1206 0.5149 MVSTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKVTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDAGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPVTGRSKGYGFVKFADEAHRNRAMTEMNGVYCSTRPMRISAATPKKSTSFQHQYAPPKAIYQYPAYTAPVNTVAPENDVNNTTVCIGNLDLNVAEEELKQAFVQFGEIVSVKIYAGKGYGFVQFGTRASAEDAIQRMQGKMIGQQVIQISWGSNLTARQDVPGGWGAQTDPNQWSAYYGYGQGYEAYAYGATHDPSLYAYGAYAGFAQYPQQVEGAQDMSAVSVPMEESYDPLAMPDVDKLNAAYLSIHGNAILGRSLWQTTSQSLQQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00573 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Cca04g00573 401 CDD RRM1_SECp43_like 11 91 - -
Cca04g00573 401 SMART rrm1_1 11 86 IPR000504 GO:0003723
Cca04g00573 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
Cca04g00573 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Cca04g00573 401 CDD RRM2_SECp43_like 96 175 - -
Cca04g00573 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 5 344 - -
Cca04g00573 401 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Cca04g00573 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Cca04g00573 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Cca04g00573 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Cca04g00573 401 SUPERFAMILY RNA-binding domain, RBD 193 315 IPR035979 GO:0003676
Cca04g00573 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Cca04g00573 401 Gene3D - 199 291 IPR012677 -
Cca04g00573 401 Gene3D - 9 89 IPR012677 -
Cca04g00573 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 5 344 - -
Cca04g00573 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Cca04g00573 401 Gene3D - 96 173 IPR012677 -
Cca04g00573 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00573 Cca-Chr4 5773851 5777656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00573 9 291 Eukaryotic Initiation Factors Gene Family AT2G23350 26.190 4.82e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00573 - - gmx:100813616 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00573 04 5773851 5777656 Cca04g00573 04 5773851 5777656 ECH
Cca10g00376 10 3973860 3976164 Cca04g00573 04 5773851 5777656 PCT