Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00569 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAGCATTAGCTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCTTCAAATTCAGGCTTTTACAAGTTTGGACTATCTGAACCCGAGAATAATTCATACTATCGTTACAGTCATGGCTATGAGGTAAATCATCACGAACAACTGGTGGACGAGTATAGGAGACCTTCAGAAAACTCATTGACAGTCAATGAACAGACAGCAGCAGTAAGCACAGATTGGGTTGAAGGTGGAAACAGCGACATGCGAGACAATTCTATTGAATGTCCTCGAAGACATCATGGTAATTCAAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTTCTTGAATTAGGAGAAGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTTCCGGTGTCAAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAGTCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAACGTATCACCTTGCCATGTAAACATGTTTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 747 0.4163 MSWNPHMEVHYNSISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSGFYKFGLSEPENNSYYRYSHGYEVNHHEQLVDEYRRPSENSLTVNEQTAAVSTDWVEGGNSDMRDNSIECPRRHHGNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK 248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00569 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Cca04g00569 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Cca04g00569 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Cca04g00569 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Cca04g00569 248 SUPERFAMILY RING/U-box 190 243 - -
Cca04g00569 248 Pfam Ring finger domain 195 236 IPR001841 -
Cca04g00569 248 SMART ring_2 196 236 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca04g00569 Cca-Chr4 5721923 5726035 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00569 5 247 C3H Transcription Factor Family AT3G63530 42.972 9.43e-65 200
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00569 K19045 - gmx:100793907 508.834
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00569 04 5721923 5726035 Cca04g00569 04 5721923 5726035 ECH
Cca10g00370 10 3883768 3889153 Cca04g00569 04 5721923 5726035 ECH
Cca10g00370 10 3883768 3889153 Cca04g00569 04 5721923 5726035 PCT