Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00569 | ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAGCATTAGCTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCTTCAAATTCAGGCTTTTACAAGTTTGGACTATCTGAACCCGAGAATAATTCATACTATCGTTACAGTCATGGCTATGAGGTAAATCATCACGAACAACTGGTGGACGAGTATAGGAGACCTTCAGAAAACTCATTGACAGTCAATGAACAGACAGCAGCAGTAAGCACAGATTGGGTTGAAGGTGGAAACAGCGACATGCGAGACAATTCTATTGAATGTCCTCGAAGACATCATGGTAATTCAAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTTCTTGAATTAGGAGAAGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTTCCGGTGTCAAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAGTCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAACGTATCACCTTGCCATGTAAACATGTTTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA | 747 | 0.4163 | MSWNPHMEVHYNSISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSGFYKFGLSEPENNSYYRYSHGYEVNHHEQLVDEYRRPSENSLTVNEQTAAVSTDWVEGGNSDMRDNSIECPRRHHGNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00569 | 248 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 236 | IPR001841 | - | |
Cca04g00569 | 248 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 246 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
Cca04g00569 | 248 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 246 | - | - | |
Cca04g00569 | 248 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 242 | IPR013083 | - | |
Cca04g00569 | 248 | SUPERFAMILY | RING/U-box | 190 | 243 | - | - | |
Cca04g00569 | 248 | Pfam | Ring finger domain | 195 | 236 | IPR001841 | - | |
Cca04g00569 | 248 | SMART | ring_2 | 196 | 236 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00569 | Cca-Chr4 | 5721923 | 5726035 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00569 | 5 | 247 | C3H Transcription Factor Family | AT3G63530 | 42.972 | 9.43e-65 | 200 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00569 | K19045 | - | gmx:100793907 | 508.834 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00569 | 04 | 5721923 | 5726035 | Cca04g00569 | 04 | 5721923 | 5726035 | ECH | |
Cca10g00370 | 10 | 3883768 | 3889153 | Cca04g00569 | 04 | 5721923 | 5726035 | ECH | |
Cca10g00370 | 10 | 3883768 | 3889153 | Cca04g00569 | 04 | 5721923 | 5726035 | PCT |