Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00568 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCACTTCTCCTTCTCCATCATCTCCTTCCAAGAGTACTCCACCATTCTATTTTCATAACCACACAAGTACAAGCATATCTTCCACTCAGTTCAAACCCTCTCCTCAAAGAAAAGCCCTTCCCCTCTTTCATCCAAGACATGCTGAAGAAGAAGATCTTGAATCTTCGTTCAGTGCCATGGAAGTGGACAAGAAAAAGAAAGAACCAAGTACCTCATCTAGCTGTTTGGATGAAGAGGATAGTGTTGTTTTACACTTAGGGCTTCCTAGCACGAGTGCATCTGCTAGTGCTGATTTAGCTTCAAGCATATACTCAACAGAGGCTTCACACAAAGAAGAAAAAGTCACTGATGCTTCTAGTCTTCTGTCAAATAGAATTAACAGAGGGCAATATTGGATCCCTACTTCTTCTCAAATTCTAATTGGTCCTACACAGTTCGCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGGCCAGAGTCTCTAAGAGGAACACAACCAACAGCTATGCTAAGACTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCAAGGGCAAAGCCACTCAAAGACTTCAGAACCCTTCAAACGCATTACAAGAGAAAGCACGGAACAAAGCCTTTCGTGTGCAGAAAATGCTGCAAAACATTTGCTGTGAGGGGTGATTGGAGAACTCATGAAAAGAACTGTGGCAAACGCTGGTATTGCTCTTGTGGCTCCGATTTTAAGCACAAAAGATCTCTTAAAGATCACATCAAGGCGTTTGGATATGGACACACGGCTTATGGAAATGACTGCTGCAACCTTGATCATGATGATGATCTAGCAGGCTCTGAAATTGAACAAGAAAATTAA 984 0.4289 MTNSYTSNDLNFWLDLNSPCLLTSPSPSSPSKSTPPFYFHNHTSTSISSTQFKPSPQRKALPLFHPRHAEEEDLESSFSAMEVDKKKKEPSTSSSCLDEEDSVVLHLGLPSTSASASADLASSIYSTEASHKEEKVTDASSLLSNRINRGQYWIPTSSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAYGNDCCNLDHDDDLAGSEIEQEN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00568 327 PANTHER ZINC FINGER PROTEIN WIP2 8 327 IPR043584 GO:0003700|GO:0010468
Cca04g00568 327 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 8 327 - -
Cca04g00568 327 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Cca04g00568 327 MobiDBLite consensus disorder prediction 23 58 - -
Cca04g00568 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Cca04g00568 327 MobiDBLite consensus disorder prediction 72 99 - -
Cca04g00568 327 MobiDBLite consensus disorder prediction 72 95 - -
Cca04g00568 327 SUPERFAMILY beta-beta-alpha zinc fingers 233 271 IPR036236 -
Cca04g00568 327 Gene3D Classic Zinc Finger 229 302 - -
Cca04g00568 327 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00568 Cca-Chr4 5701247 5703785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00568 31 325 C2H2 Transcription Factor Family AT1G51220 59.164 2.53e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g00568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00568 - - gmx:100802239 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00568 04 5701247 5703785 Cca04g00568 04 5701247 5703785 ECH
Cca10g00366 10 3854408 3856690 Cca04g00568 04 5701247 5703785 ECH
Cca02g00800 02 21646586 21649311 Cca04g00568 04 5701247 5703785 ECH
Cca03g01986 03 39856311 39859153 Cca04g00568 04 5701247 5703785 ECH
Cca10g00366 10 3854408 3856690 Cca04g00568 04 5701247 5703785 PCT