Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00568 | ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCACTTCTCCTTCTCCATCATCTCCTTCCAAGAGTACTCCACCATTCTATTTTCATAACCACACAAGTACAAGCATATCTTCCACTCAGTTCAAACCCTCTCCTCAAAGAAAAGCCCTTCCCCTCTTTCATCCAAGACATGCTGAAGAAGAAGATCTTGAATCTTCGTTCAGTGCCATGGAAGTGGACAAGAAAAAGAAAGAACCAAGTACCTCATCTAGCTGTTTGGATGAAGAGGATAGTGTTGTTTTACACTTAGGGCTTCCTAGCACGAGTGCATCTGCTAGTGCTGATTTAGCTTCAAGCATATACTCAACAGAGGCTTCACACAAAGAAGAAAAAGTCACTGATGCTTCTAGTCTTCTGTCAAATAGAATTAACAGAGGGCAATATTGGATCCCTACTTCTTCTCAAATTCTAATTGGTCCTACACAGTTCGCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGGCCAGAGTCTCTAAGAGGAACACAACCAACAGCTATGCTAAGACTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCAAGGGCAAAGCCACTCAAAGACTTCAGAACCCTTCAAACGCATTACAAGAGAAAGCACGGAACAAAGCCTTTCGTGTGCAGAAAATGCTGCAAAACATTTGCTGTGAGGGGTGATTGGAGAACTCATGAAAAGAACTGTGGCAAACGCTGGTATTGCTCTTGTGGCTCCGATTTTAAGCACAAAAGATCTCTTAAAGATCACATCAAGGCGTTTGGATATGGACACACGGCTTATGGAAATGACTGCTGCAACCTTGATCATGATGATGATCTAGCAGGCTCTGAAATTGAACAAGAAAATTAA | 984 | 0.4289 | MTNSYTSNDLNFWLDLNSPCLLTSPSPSSPSKSTPPFYFHNHTSTSISSTQFKPSPQRKALPLFHPRHAEEEDLESSFSAMEVDKKKKEPSTSSSCLDEEDSVVLHLGLPSTSASASADLASSIYSTEASHKEEKVTDASSLLSNRINRGQYWIPTSSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAYGNDCCNLDHDDDLAGSEIEQEN | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00568 | 327 | PANTHER | ZINC FINGER PROTEIN WIP2 | 8 | 327 | IPR043584 | GO:0003700|GO:0010468 | |
Cca04g00568 | 327 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 8 | 327 | - | - | |
Cca04g00568 | 327 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 169 | 189 | IPR013087 | - | |
Cca04g00568 | 327 | MobiDBLite | consensus disorder prediction | 23 | 58 | - | - | |
Cca04g00568 | 327 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 167 | 194 | IPR013087 | - | |
Cca04g00568 | 327 | MobiDBLite | consensus disorder prediction | 72 | 99 | - | - | |
Cca04g00568 | 327 | MobiDBLite | consensus disorder prediction | 72 | 95 | - | - | |
Cca04g00568 | 327 | SUPERFAMILY | beta-beta-alpha zinc fingers | 233 | 271 | IPR036236 | - | |
Cca04g00568 | 327 | Gene3D | Classic Zinc Finger | 229 | 302 | - | - | |
Cca04g00568 | 327 | MobiDBLite | consensus disorder prediction | 23 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00568 | Cca-Chr4 | 5701247 | 5703785 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00568 | 31 | 325 | C2H2 Transcription Factor Family | AT1G51220 | 59.164 | 2.53e-118 | 343 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca04g00568 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00568 | - | - | gmx:100802239 | 531.946 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00568 | 04 | 5701247 | 5703785 | Cca04g00568 | 04 | 5701247 | 5703785 | ECH | |
Cca10g00366 | 10 | 3854408 | 3856690 | Cca04g00568 | 04 | 5701247 | 5703785 | ECH | |
Cca02g00800 | 02 | 21646586 | 21649311 | Cca04g00568 | 04 | 5701247 | 5703785 | ECH | |
Cca03g01986 | 03 | 39856311 | 39859153 | Cca04g00568 | 04 | 5701247 | 5703785 | ECH | |
Cca10g00366 | 10 | 3854408 | 3856690 | Cca04g00568 | 04 | 5701247 | 5703785 | PCT |