Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00564 ATGATGCTGAAAGAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCACTGGAAATGAACCTGTTGTTGCTGCAGCTAATGTTGATATTCCAGTTATTTCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTTCAGAGGGGAGTGGTGAGGCAAAGCCGAAGGATGGTCCAAAACGTTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGCAACCTTTATTGTGCTGTACATCGCTACTCAGACAAACATAGTTGTCCATTTGATTATCGCACTGCCGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATATAA 402 0.4502 MMLKEEQAKLAASSIGNIMNGSSSSTGNEPVVAAANVDIPVISVEPKTVSVQPLFGSGSEGSGEAKPKDGPKRCSSCNKRVGLTGFNCRCGNLYCAVHRYSDKHSCPFDYRTAARDAIAKANPVVKAEKLDKI 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00564 133 ProSiteProfiles Zinc finger AN1-type profile. 68 114 IPR000058 GO:0008270
Cca04g00564 133 SUPERFAMILY AN1-like Zinc finger 62 128 IPR035896 -
Cca04g00564 133 MobiDBLite consensus disorder prediction 53 74 - -
Cca04g00564 133 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 133 - -
Cca04g00564 133 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 133 - -
Cca04g00564 133 SMART AN1_Zf_4 74 111 IPR000058 GO:0008270
Cca04g00564 133 Pfam AN1-like Zinc finger 74 110 IPR000058 GO:0008270
Cca04g00564 133 Gene3D - 57 129 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00564 Cca-Chr4 5663690 5664091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00564 62 133 C2H2 Transcription Factor Family AT3G52800 55.556 3.01e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00564 - - gmx:100500070 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00564 04 5663690 5664091 Cca04g00564 04 5663690 5664091 ECH
Cca10g00363 10 3831539 3831967 Cca04g00564 04 5663690 5664091 ECH
Cca03g01991 03 39948224 39950879 Cca04g00564 04 5663690 5664091 ECH