Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00563 ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCTACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCCACTCAATACCATCAATTTTCTCTTGGTTTGGTGAATGAGAACATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACAGTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGACCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACGAACAACAGTCTCGTGCCTATGCAAAACCCAGTGGTGGACACACCTAGCAATGACTATCAAGAAAATGGTAATAGTAATTTGCAATCGTTGACACTTTCCATGGGAAGTGGAAAGGATTCAACATGCGAAACCAGTGGTGAAAATAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACATTCGGCCAGAGAACATCAATTTATCGTGGTGTAACACGACATAGATGGACTGGAAGGTATGAAGCTCACCTCTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTGGCTGCACTGAAGTATTGGGGAACATCCACCACTACCAACTTTCCTATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAGGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGGAGATGGCAGGCGAGGATTGGCAGGGTCGCAGGAAACAAAGATCTTTACTTAGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCCATAAAGTTCAGAGGTTTGAACGCTGTGACCAACTTTGACATGAGTCGTTACGACGTGAAAGCCATTCTCGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAACGGTTGAAGGAAGCTCAAGCTCTAGAGTCTTCGAGGAAACGTGAAGAGATGATAGCACTTGGTTCATCCACGTTTCAATACGGAACCTCAAGCTCTAGCAGGCTCCACCACGCGTACCCTCTAATGCAGCATCACCAGTTCGAGCAACCTCAGCCTCTGCTAACTCTCCAAAACCACGACATAGGTTCTCACTTCTCTCACCAAGACCCTTCGTCGCTGCACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGCGTTTCGTCTTACCTTCAGAACAACGCTCAGCTCTACAACGGTTACCTTCAGAACCACCCTGCGTTGCTTCAGGGAATGATGAACATTGGCtcttcttcttcttcttcatctGTGTTGGataataataataatagtaacaataataatagtaatGTTGGTGGGTTTGTGAATGGATTTGGTATGGCTTCGAATAATGCTGCGTCGGGGAACGCCGTGGGGACGGCGGAGGAGCTAGGGTTGGTGAAGGTTGACTATGACATGCCCGCCGGAGGCTACGGTGGTTGGTCGGCGGCGGCGGCGGAGTCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1656 0.4547 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNLINSHSSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNNSLVPMQNPVVDTPSNDYQENGNSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHHAYPLMQHHQFEQPQPLLTLQNHDIGSHFSHQDPSSLHQGYIQTQLQLHQQSGVSSYLQNNAQLYNGYLQNHPALLQGMMNIGSSSSSSSVLDNNNNSNNNNSNVGGFVNGFGMASNNAASGNAVGTAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00563 551 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 550 - -
Cca04g00563 551 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 550 - -
Cca04g00563 551 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Cca04g00563 551 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Cca04g00563 551 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Cca04g00563 551 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Cca04g00563 551 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00563 Cca-Chr4 5650624 5653881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00563 3 551 AP2-EREBP Transcription Factor Family AT1G51190 64.107 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca04g00563 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00563 K09285 - gmx:100788471 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00563 04 5650624 5653881 Cca04g00563 04 5650624 5653881 ECH