Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00563 | ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCTACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCCACTCAATACCATCAATTTTCTCTTGGTTTGGTGAATGAGAACATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACAGTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGACCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACGAACAACAGTCTCGTGCCTATGCAAAACCCAGTGGTGGACACACCTAGCAATGACTATCAAGAAAATGGTAATAGTAATTTGCAATCGTTGACACTTTCCATGGGAAGTGGAAAGGATTCAACATGCGAAACCAGTGGTGAAAATAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACATTCGGCCAGAGAACATCAATTTATCGTGGTGTAACACGACATAGATGGACTGGAAGGTATGAAGCTCACCTCTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTGGCTGCACTGAAGTATTGGGGAACATCCACCACTACCAACTTTCCTATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAGGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGGAGATGGCAGGCGAGGATTGGCAGGGTCGCAGGAAACAAAGATCTTTACTTAGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCCATAAAGTTCAGAGGTTTGAACGCTGTGACCAACTTTGACATGAGTCGTTACGACGTGAAAGCCATTCTCGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAACGGTTGAAGGAAGCTCAAGCTCTAGAGTCTTCGAGGAAACGTGAAGAGATGATAGCACTTGGTTCATCCACGTTTCAATACGGAACCTCAAGCTCTAGCAGGCTCCACCACGCGTACCCTCTAATGCAGCATCACCAGTTCGAGCAACCTCAGCCTCTGCTAACTCTCCAAAACCACGACATAGGTTCTCACTTCTCTCACCAAGACCCTTCGTCGCTGCACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGCGTTTCGTCTTACCTTCAGAACAACGCTCAGCTCTACAACGGTTACCTTCAGAACCACCCTGCGTTGCTTCAGGGAATGATGAACATTGGCtcttcttcttcttcttcatctGTGTTGGataataataataatagtaacaataataatagtaatGTTGGTGGGTTTGTGAATGGATTTGGTATGGCTTCGAATAATGCTGCGTCGGGGAACGCCGTGGGGACGGCGGAGGAGCTAGGGTTGGTGAAGGTTGACTATGACATGCCCGCCGGAGGCTACGGTGGTTGGTCGGCGGCGGCGGCGGAGTCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA | 1656 | 0.4547 | MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNLINSHSSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNNSLVPMQNPVVDTPSNDYQENGNSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHHAYPLMQHHQFEQPQPLLTLQNHDIGSHFSHQDPSSLHQGYIQTQLQLHQQSGVSSYLQNNAQLYNGYLQNHPALLQGMMNIGSSSSSSSVLDNNNNSNNNNSNVGGFVNGFGMASNNAASGNAVGTAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE | 551 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00563 | 551 | ProSiteProfiles | AP2/ERF domain profile. | 163 | 229 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 4 | 550 | - | - | |
Cca04g00563 | 551 | CDD | AP2 | 162 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | ProSiteProfiles | AP2/ERF domain profile. | 265 | 323 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 4 | 550 | - | - | |
Cca04g00563 | 551 | CDD | AP2 | 264 | 325 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | Gene3D | AP2/ERF domain | 265 | 325 | IPR036955 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | Gene3D | AP2/ERF domain | 163 | 231 | IPR036955 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | Pfam | AP2 domain | 163 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | Pfam | AP2 domain | 266 | 315 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | SMART | rav1_2 | 265 | 329 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | SMART | rav1_2 | 163 | 235 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | SUPERFAMILY | DNA-binding domain | 162 | 231 | IPR016177 | GO:0003677 | |
Cca04g00563 | 551 | PRINTS | Ethylene responsive element binding protein signature | 164 | 175 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | PRINTS | Ethylene responsive element binding protein signature | 305 | 325 | IPR001471 | GO:0003700|GO:0006355 | |
Cca04g00563 | 551 | SUPERFAMILY | DNA-binding domain | 264 | 325 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00563 | Cca-Chr4 | 5650624 | 5653881 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00563 | 3 | 551 | AP2-EREBP Transcription Factor Family | AT1G51190 | 64.107 | 0.0 | 650 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-AP2 | Cca04g00563 | AP2 | 9.8e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00563 | K09285 | - | gmx:100788471 | 959.903 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00563 | 04 | 5650624 | 5653881 | Cca04g00563 | 04 | 5650624 | 5653881 | ECH |