Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00562 ATGGTAAAGGCGAACAGCATTTGTGTGGTATCGTATCGAATGGATTGGAGAACAGGTCCTCCCCCGTCGCAGGAGGTGGACCTAGACAACCTGAAAGCCCTCAAAGTCCTGGGAAAAGGCGCTATGGGCACTGTCTTCCTCGTCCGCGAcaacaccaacaccaacaccaacaccTTCGCCCTGAAGGTGGTGGACAAAACGTGCGTCCACGCCAAGGTGGACGCCGAGCGGCGTGCGCGTTGGGAAATCCAAGTGCTCTCCACGCTCTCCCACCCTTTCCTCCCTTCCCTCATAGCCACCTTGGAGTCCCCACAGTTCATAGCGTGGGCCCTCCCGTATTGCCCCGGCGGTGACCTCAACGTTCTCCGCTACCGCCAAACCGACCGCACCTTCTCCCCTTCCGTTATACGCTTCTACGTCGCTGAAATCATCTGCGCGCTAGACCACCTTCATTCCATGGGCCTCGCCTACCGCGACCTTAAGCCCGAAAACGTCCTCATCCAAAACACCGGCCACGTCACCCTAACGGATTTCGACCTATCACGAAAATTCTCCcccaagcccaaccctaaacctaaacctaatccCATCGTCACTCCCCTCCCCGTCGCCCCCGAGCCCCGCCGCCGTAAGCACCGCCGCAACTTCACCCGCTGGATCCCCCTCCTCCAGCCGGACGCCCGAACCAAGCACGCCAACGGCCTTAAGAAGGCCAACTCCGCCCGCGTCAGCCCCGTCAGCCGCCGGAAACCTAGCTTCTCCGACGGCGAGCGCTCCAACTCCTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTCCGCGGCGACGGCCACGAGTTCGCCGTGGACTGGTGGGCGCTCGGAATCCTCATCTACGAAATGCTCTACGGTACGACGCCGTTCAAAGGCAAAAACCGCAAGGAAACGTTCCGCAACGTTCTCACGAAGTCGCCGGAGTTCGTCGGGAAGAGAACGCCGCTCACCGACCTTATTGAGAGGCTCTTGATGAAGGATCCGACGAGGCGGTTGGGTTACACGCGCGGCGCGGCGGAGATCAAGGAGCACTCGTTCTTCCGAGGAGTTCGCTGGGACTTGTTGACGGAGGTGGTCCGGCCGCCGTTTATTCCGTCGCGGGAGGACGCCGCCGGAGAGGAGCCGGAGAAGTTAGGGAACGGTGGGTTGGATATTAGGGATTACTTCCGGAAGTTGAAATcgtcgccgtcgttgccggcttcgccgtcggtgtcttcgtcgTACGGGCTCAAGAAGAATGTTTCGCTAACAGAATTCTGA 1296 0.5563 MVKANSICVVSYRMDWRTGPPPSQEVDLDNLKALKVLGKGAMGTVFLVRDNTNTNTNTFALKVVDKTCVHAKVDAERRARWEIQVLSTLSHPFLPSLIATLESPQFIAWALPYCPGGDLNVLRYRQTDRTFSPSVIRFYVAEIICALDHLHSMGLAYRDLKPENVLIQNTGHVTLTDFDLSRKFSPKPNPKPKPNPIVTPLPVAPEPRRRKHRRNFTRWIPLLQPDARTKHANGLKKANSARVSPVSRRKPSFSDGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGTTPFKGKNRKETFRNVLTKSPEFVGKRTPLTDLIERLLMKDPTRRLGYTRGAAEIKEHSFFRGVRWDLLTEVVRPPFIPSREDAAGEEPEKLGNGGLDIRDYFRKLKSSPSLPASPSVSSSYGLKKNVSLTEF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00562 431 MobiDBLite consensus disorder prediction 407 431 - -
Cca04g00562 431 MobiDBLite consensus disorder prediction 231 260 - -
Cca04g00562 431 MobiDBLite consensus disorder prediction 408 431 - -
Cca04g00562 431 Gene3D Transferase(Phosphotransferase) domain 1 256 378 - -
Cca04g00562 431 Gene3D Transferase(Phosphotransferase) domain 1 118 210 - -
Cca04g00562 431 SMART serkin_6 31 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00562 431 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 26 409 - -
Cca04g00562 431 ProSiteProfiles Protein kinase domain profile. 31 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00562 431 MobiDBLite consensus disorder prediction 187 203 - -
Cca04g00562 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Cca04g00562 431 Pfam Protein kinase domain 255 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00562 431 Pfam Protein kinase domain 33 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00562 431 Gene3D Phosphorylase Kinase; domain 1 31 117 - -
Cca04g00562 431 MobiDBLite consensus disorder prediction 181 210 - -
Cca04g00562 431 ProSitePatterns Protein kinases ATP-binding region signature. 37 62 IPR017441 GO:0005524
Cca04g00562 431 SUPERFAMILY Protein kinase-like (PK-like) 28 381 IPR011009 -
Cca04g00562 431 PANTHER FLIPPASE KINASE 1-RELATED 26 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00562 Cca-Chr4 5626540 5628067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00562 26 431 AGC Kinase Gene Family AT3G20830 60.192 1.33e-165 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca04g00562 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00562 - K08286 gmx:100785281 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00562 04 5626540 5628067 Cca04g00562 04 5626540 5628067 ECH
Cca10g00361 10 3818401 3820010 Cca04g00562 04 5626540 5628067 PCT