Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00556 ATGGAATCAGATCTTCAGCAGCACCCTCCGATGTTTTTGGATCATCACCAGCAGCAGATGAATTCAGGGTTGACACGGTACCGATCGGCTCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAGCACGTTTTCAATCGCCCCTCAAGCCCCGAAACAGAGCGAATGTTGACGCGGTTTGTGAATAGTCTCGGTGGGGGTGATGCTGATGCTGATGCAGAGGATTCACTTGCTACTCAGAATCCCCCAACTGTTGTTGCAGTTAAAGAAGAGGTTAATGTTAATCCTCAACCACAGGATGTGCCATCCATGAGTAACGAACCCCGTGTTCTCCAACAGCAACAACAAAGTAATATCAATAGTTATGGATCTTCTGCTCCTCACAGTTTTTACCAAAACACTGGACGGCCACCTTTGCCAAACCAGATGAAGACTGGTCGTGGAAGCAGTTCCAGTCTCATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAATATTGAAACTGGCTATGCTGCTGTGAGAGGCATGGGAACTATGGGAGCGGTTAGTAACACTAGCGAGGAAGCAAACTTTTCTCCTGCAACGGGGATGAAGAATGCACCAAACTACGCTTCGGGATTAATGTCATCAAGAGCTGAAATTGGAAACACGAGCAATGCACAGAACAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGTAACGAATTTATCCCCGGTTTCCCTGTAGGTGCATGGGATGATTCTACAATCATGTCTGACAATATGACTGGTCTAAAGAGATTTAGAGAGGAGGATGTAAAACCATTTTCTGGTTTAAATGCAGCTGAAAATCAGAATGAAACAGGAGGCCAGCCTTCTTCTGCTTTGGCTCATCAGTTGAGTTTGCCAAATACTTCGGCAGAAATGGCAGCTATTGAGAAGTTTCTTCAGCTCTCAGATTCGGTTCCTTGCAAAATTCGTGCCAAGAGGGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTCGTCCCGAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGCAAGTTCAGACTCTTTCAGAGAATCGCGCGAAGTGTACGTGTGCACAGAAGCAGCAGCAATAA 1215 0.4543 MESDLQQHPPMFLDHHQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAEDSLATQNPPTVVAVKEEVNVNPQPQDVPSMSNEPRVLQQQQQSNINSYGSSAPHSFYQNTGRPPLPNQMKTGRGSSSSLIRHGSSPAGLFSNINIETGYAAVRGMGTMGAVSNTSEEANFSPATGMKNAPNYASGLMSSRAEIGNTSNAQNNAENEGFAESQGNEFIPGFPVGAWDDSTIMSDNMTGLKRFREEDVKPFSGLNAAENQNETGGQPSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQVQTLSENRAKCTCAQKQQQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00556 404 Coils Coil 372 399 - -
Cca04g00556 404 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Cca04g00556 404 SMART finulus 338 388 IPR011598 GO:0046983
Cca04g00556 404 Gene3D - 333 404 IPR036638 GO:0046983
Cca04g00556 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 396 IPR036638 GO:0046983
Cca04g00556 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 401 - -
Cca04g00556 404 MobiDBLite consensus disorder prediction 118 159 - -
Cca04g00556 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
Cca04g00556 404 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00556 Cca-Chr4 5506554 5510904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00556 1 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.651 1.22e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g00556 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00556 - - gmx:100803833 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00556 04 5506554 5510904 Cca04g00556 04 5506554 5510904 ECH
Cca10g00357 10 3776902 3780272 Cca04g00556 04 5506554 5510904 ECH
Cca02g00779 02 20638498 20642461 Cca04g00556 04 5506554 5510904 ECH
Cca03g02001 03 40130575 40133282 Cca04g00556 04 5506554 5510904 ECH