Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00548 ATGGATTTAGAAAGATCGATAGAGGACCAGTTCTCCAAGTTACACCCTTCCTTGCCAGAAAACACCAGAATCGGAATAGTGGGTGCTGGTCCAAGTGGCTTATCAGCAGCTTACGCACTAGTCAGACTTGGTTATAAGAATATCACAGTTTTGGAGAAACATCATACGGTTGGTGGCATGTGTGAATCAATAGAAATTGAAGGAAAAGTTTATGATTTGGGCGGGCAAGTTCTTGCAGCAAGCAGTGCTCCAATCATTTTTCACTTGGCAAGAGAGACAGGCTCAACACTAGAAGAATTGGACTCACACAAGCTTGCTGTTATTGATCCTTCCTCCGGAGAATATCAAGATATTAAAGTTGCCGATGATTATGTATCTATTATGTCACTTACATTGGAAATTCAAGAAAAAGTGCAGAATTGTGGTCGTATTGGCGTTCATGCTGTCAGTGACATTGCTTCAGACTTAACTCCAGAATATCTTGAGCATCATGGACTCAAATCTCTTCCTAAATCTGTAGCTTATGGTTACACTGCTTCAGGATATGGATTTATTCAAGACATGCCTTATGCCTACCTTCATGAATTTACTAGAACGTCCATGGCTGGAAAAATTCGACGATTTAAAGATGGATATACTAATCTTTGGCAGAAGGTTGCTGAATCACTTCCTTTAAAACTTTGCTGTAACACTGAAGTATTGTCAATCAGGCGAAAATCTGATGGTGTCACTGTTAATGTCAAGAGCTTAAACCAAGTTGAAACTTTGGAATTTGATAAGATCATAATCTCTGGCTCGTTTCCATTTAGATATGGAAGAACTTACAGATCATTGCCTTCAACCAGCATAGAGTGTGAAACAGAAGTAATGGATGCAAGTGACCTTGAAAGGGATTTGTTCAGCAAAGTAGAGACAAATGACTACTACACCACTGTTTTAAAGATTAAAGGGCTAGAACATTTGCATGTTGGATTTTATTATTTTAGTGAATATATGGAAGATCCTAGCACAGTTGGGCATCCAGTTGCTATGCAGAGATTTTATGCTGACACTGATATATTCTTATTCTGGTCCTATGGCAACTCTGTTGATATTAAGGGACCAACAGTCACAGAGCTTGCGATCAAGACAATAGAAGCCATGGGGGGAGAGGTTGAGAATGTCCTTCTTCAACGTCGCTTTATGTATTTTCCTCATGTTTGTAGCCTAGATATGAAAGATGGATTTTATGAAAAGTTGGAAACAAAGCTTCAAGGTTCAAGAAATACTTATTATGTAGGTGGACTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAACTTTGCAAATAGCAATGATTTACCTATATTGCCTTACACCAAGAATTTGTTTCCCTTGCAAACTGAGTGCCAGAAAAAGAATCCTAAAGAATTAGGCGAATTGCCAGAACTGCAATTTCCTAATTTGCCTACTTTGGATAGCTACTTAAAGCACTGGGGAACTCATCCAATCACTCAAAACAGGACTCTCTATACTTGGGTCAATGAACAAGGGATTCCGGTATGCAAAAGGACCTATGGAGAACTATATTTTAATTCTTCTTGCATTGCTCATAAGCTCCTAACAAGCCAAAATCCAGTTATCAAGCCAGGTGACAAAGTTCTCCTTGTCTATGTCCCCGGTTTGGATTTTATTGACGCCTTCTTTGGAAGTCTAAGAGCCAAAGTCATACCAGTGCCTATTCTTCCTCCGGATCCCATGCAAACAAATGGACAAGCACTAATGCAAATTGAAAACATTGCCAAGTCATGTAGCATTGTGGCAATTTTATCAACAGTAGCTTATCACTCAGCAGTTCGTGCAGGTTCATTGAAAAATTTATTCTTATTAACTGGAAAAAATGGGAAATCTTCAGCTAGATGGCCAAATCTTCCCTGGTTTCACACTGATACATGGGTCAAGAACTCCAAAAGTATGGTTTTGGAACACCTTGACAAACAATGTGAACCCCAGCCAAATGATATATGTTTCTTGCAATTCACCTCGGGTTCAACTACTGATGCTAAAGGAGTCATGATCACTCATGGTGGCCTAATTCACAATGTAAAGTTGATGAGAAGAAGATACAAGAGCACCTCAAGGACAGTGCTAGTAAGCTGGCTTCCTCAGTATCATGACATGGGGCTAATTGGGGGACTTTTTACATCTCTTGTTAGTGGTGGGTCTGCAGTTTTGTTTTCACCAATGACATTTATCAAGAAACCACTCTTGTGGCTTAAAACTATTAGCAAGTATCAAGCAACTCATAGTGCTGGCCCCAACTTTGCCTTTGAGTTAGTGATTCGAAAAATGGAGTCTAACAAGGATAAGCTTCAGAATTTAGACCTTTCATCCTTGACTTTTCTTATGATTGCTGCTGAGCCAGTGAGACAGAAGACCCTGAAAAGATTTATTGAGCTAACAAGTCCTTTTGGCTTATCTGAAAAGGTGATGGCTCCTGGATATGGCTTAGCAGAAAATTGTGTTTTTGTCTGTTGTGCATTCGGCGAAGGTAAGCCAATCATTGTTGATTGGCAAGGAAGAGTTTGTTGTGGATATGTTAATCACAAGAATGTGGGTGTTGATATTAGAATAGTTGATCCAGAGAGTTGTGAAGAGATTCAGGAAGATGGAAAGGAGGGAGAAATCTGGATTAGTAGTCCAAGTGCAGGCATAGGATACTGGGGAAAGGAAGAATTGAGTCAAAAAACTTTCAGGAATGAACTTCATAATCTTCCTGGCCATATCTACACAAGAACTGGAGACTTGGGACGAATAATAGATCAGAAGCTATTCATCACTGGAAGGATCAAGGATCTTATCATTGTAGCTGGAAGAAATATTTACTCAGCAGATGTTGAAAAGACAGTTGAGACTTCATCTGAATTTCTTCGTCCTGGTTGCTGTGCTGTCATTGGAGTCCCTGAAGAAATTTTATCAGCAAAGGGGATTTCCATTCCAGATGGCTCTGATCAGGTTGGCTTGGTTGTGATTGCAGAAGTGAGGGATGGTAAGCCAGTCAGCAAGGATGTGATTGAGAAAATTAAAACTCGTGTGGTAGAAGAACATGGAGTTGGTGTTGCTTCTGTCAAGTTGATCAAGCCTAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTGTCAAACAGTTCACAAACGAAACACTGAACTTGGTACCAGAAGGTCAAAGGCCTATTTTAAGAAAGAAGTCGTGGTTAGGATCATTTACTACAAGAATGCTAAGAGAAGGAAAAACACCTGAGCTACTTGCACCTAGAAAAAGGATAAGTAAGAATGAAATTGTAGAGTTCTTGAAAGGGCTAATTTCTGAGCAAACTGGAATCGCTGTCAACAACATCTCAGTTACAGACAACCTGACATCCTATGGAATTGACTCGATTGGTGTGGTTAAAGCAACTCAAAAACTCTCAAATTTCTTAGGAACTCAAGTTGCAGCTATAGATGTTTTCACTGCATCTTGCATTCTAGATTTGGCTAACTTCTCTGAGGATCTTATATCAAAGTCTGAGCCTCAACTTTCAAGCAATCCATCCAATGTTCCAGAAGCTGAGACTGATTCCACTGAACTGATTGTGGAGGTATCCAAGTCTCGCCTATTTGCTATCCGTGTACTTCAACTCCTAGCACTTGTTTATATTTCTATCATGTTGGTATCTCCTGCATATCTATCCATCACTACTTATCTAAATTTCATAGAAAGTTCCAGTGAATGGATAGAAGGATTTCCCTGGTTGAATTACTTAATTTCCCTGACTTTTGCACCTCTTGCTTGGATTCTTTGCATTACTTCTACTTGCATTTGCATTTCATTGCTTAGAAGCTCTTTCTTGGGACCAAATTATGGTCTTACCTCTGAAATCTCTATCTATTCAATGGATTTTGTCAAATGGTGGGCTCTATATAAGGTTCAAGAAATTTCTTCTAAAGTTCTGGCGGTACACCTCAGGGGAACAGTGTTTCTGAAACACTGGTTTGAGATGCTGGGTGCTAGAATTGGATCCTCAGTTTTACTTGATACAATTGATATCACTGACCCATCTTTGGTATCAATTGGAGATGAAGTTGTGATTGCTGAAGGTGTTTTGATTCAAAGCCACGAGGTAAAGAATGGCGTTTTAAGTTTCCATCCTATTAGTATTGGCAAATGTTCTTCCACTGGACCTTATGCTGTTATCCAAAAAGGAAGTGTTATTGGAGAAGGTGCAGAGGTGCAGGCCTTGCAAAAGTTTGGCCAAGGCCAACATGTCTTCAAACCTGCAAAGCTTAATAATGATAATAAGAATGCAGAGTTCCCAGTTATTACCAACAAAATTCAACATGATATTATCTACCATTTTATGGGAATCTACCTCGTTGGCTTTCTCAGCTCTCTTTCTGCTGTTGTTGCCTACTTGTTATATATTAGATTCTTCAAGCAACCTCCATCACCTCAACACTTTTCCTTTGTTTGCATATGTGGGGCCTTCCATTGGATCCCGTTTACCATCATTGCATATGCTACCATGTTTTCTAAAGTCTCATCAAATTACATTACCTTTGCCATTGCATTCACCACTGCCTACTTGCTTCATGGTTTCATACTCATTATTCTCTCCACTGCTTTTACTCGCCTCCTCAAAAGTAGTCAAAACCAAACCGAATTTAAAACCCGGCTTCGATGTCAAGTGACAACTTCCTGCCACCTTAGATTTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCATATATTTACGCCTTTTGGGGGCAAAAATTGGCAAGCATTGTTCCATTAGAGCCATCAACCCAGTTTCATATCCAGAGTTAATGTCAATTGGTGCCGGTGTCCATCTCGGTGATTTTAGTCGGATAATTACAGGTTTTCATTCTTCAAGTGGATATGTAAGTGGAAAAATTGAGGTTCAGGACAATTCTGTTATTGGTAGTCAGAGTCTAATTCTTCCTGGTTCACTAGTCCAAAAGAATGTCATCCTTGGAGCACTTTCAGTTGCTCCAATGAATTCTACACTCCAAGAGGGTGGTGTCTACATTGGATCACAAACCCAAGTTGTCATAAGGAACTCAGTGAAGAATGCTTATGATGAGGGGATAGAAGAGATGGACATGGTAAGCAAGAAAAAACTCGGTAATTTGGTGCAGAAAAATGACTCACAGAAAGTGACCTTGACCAGAACATGGTATCAGAACTTCTCAGCACTTTTCACTCAACCACTGCTACAAACAGTGTTACCTCACATGGTGTTGGGTTTGGCAATTTTTCCTCCCTTGAACTGTGTTGTTTACCTGAAGAGTGCCAAGAAGCTTCCAATATATTGGTTGTTACCCTTGTTTTGGGTTCTCTCAGGAGCCTTAGCTGCATTAGCATGTGTGATGGCCAAGTGGATTCTGGTAGGAAGGAAGAAAGCTGGTGAAACAGTTCCTATATGGAGTCAAAGGATCACATTGGACAGCACATGGCAGGCTATTAGAACCTTAGTTGGAGACTATTTCATGGACATGACATGTGGATCATTTTGGTTtgtgatgtggatgaagttgatgggtgcagatgtggatatggaACATGCAGTTTACGTGGATAGCATGGGAGCCTTGTTAAACCCTGAAATGGTGAAGATTGAGAGAGGGGGGTGTGTAGGAAGAGAAGCCTTGCTCTTTGGACATGTGTATGAAGGAGGAGGGATGGTGAAGTTTGGAAAGATCAAAATAGGAGAAGATGGGTTTGTAGGGAGTAGAGCAGTGGCCATGCCAGGTGTGCAATTAGAGAATGAGGGCAATCTTAGTGCTTTGTCACTTGCCATGAAAGAAGAAATCATTAGATCAAGGTGA 5907 0.3987 MDLERSIEDQFSKLHPSLPENTRIGIVGAGPSGLSAAYALVRLGYKNITVLEKHHTVGGMCESIEIEGKVYDLGGQVLAASSAPIIFHLARETGSTLEELDSHKLAVIDPSSGEYQDIKVADDYVSIMSLTLEIQEKVQNCGRIGVHAVSDIASDLTPEYLEHHGLKSLPKSVAYGYTASGYGFIQDMPYAYLHEFTRTSMAGKIRRFKDGYTNLWQKVAESLPLKLCCNTEVLSIRRKSDGVTVNVKSLNQVETLEFDKIIISGSFPFRYGRTYRSLPSTSIECETEVMDASDLERDLFSKVETNDYYTTVLKIKGLEHLHVGFYYFSEYMEDPSTVGHPVAMQRFYADTDIFLFWSYGNSVDIKGPTVTELAIKTIEAMGGEVENVLLQRRFMYFPHVCSLDMKDGFYEKLETKLQGSRNTYYVGGLMAFELTERNSSYAMALICKNFANSNDLPILPYTKNLFPLQTECQKKNPKELGELPELQFPNLPTLDSYLKHWGTHPITQNRTLYTWVNEQGIPVCKRTYGELYFNSSCIAHKLLTSQNPVIKPGDKVLLVYVPGLDFIDAFFGSLRAKVIPVPILPPDPMQTNGQALMQIENIAKSCSIVAILSTVAYHSAVRAGSLKNLFLLTGKNGKSSARWPNLPWFHTDTWVKNSKSMVLEHLDKQCEPQPNDICFLQFTSGSTTDAKGVMITHGGLIHNVKLMRRRYKSTSRTVLVSWLPQYHDMGLIGGLFTSLVSGGSAVLFSPMTFIKKPLLWLKTISKYQATHSAGPNFAFELVIRKMESNKDKLQNLDLSSLTFLMIAAEPVRQKTLKRFIELTSPFGLSEKVMAPGYGLAENCVFVCCAFGEGKPIIVDWQGRVCCGYVNHKNVGVDIRIVDPESCEEIQEDGKEGEIWISSPSAGIGYWGKEELSQKTFRNELHNLPGHIYTRTGDLGRIIDQKLFITGRIKDLIIVAGRNIYSADVEKTVETSSEFLRPGCCAVIGVPEEILSAKGISIPDGSDQVGLVVIAEVRDGKPVSKDVIEKIKTRVVEEHGVGVASVKLIKPRTISKTTSGKIKRFECVKQFTNETLNLVPEGQRPILRKKSWLGSFTTRMLREGKTPELLAPRKRISKNEIVEFLKGLISEQTGIAVNNISVTDNLTSYGIDSIGVVKATQKLSNFLGTQVAAIDVFTASCILDLANFSEDLISKSEPQLSSNPSNVPEAETDSTELIVEVSKSRLFAIRVLQLLALVYISIMLVSPAYLSITTYLNFIESSSEWIEGFPWLNYLISLTFAPLAWILCITSTCICISLLRSSFLGPNYGLTSEISIYSMDFVKWWALYKVQEISSKVLAVHLRGTVFLKHWFEMLGARIGSSVLLDTIDITDPSLVSIGDEVVIAEGVLIQSHEVKNGVLSFHPISIGKCSSTGPYAVIQKGSVIGEGAEVQALQKFGQGQHVFKPAKLNNDNKNAEFPVITNKIQHDIIYHFMGIYLVGFLSSLSAVVAYLLYIRFFKQPPSPQHFSFVCICGAFHWIPFTIIAYATMFSKVSSNYITFAIAFTTAYLLHGFILIILSTAFTRLLKSSQNQTEFKTRLRCQVTTSCHLRFAKLLSGTEAFCIYLRLLGAKIGKHCSIRAINPVSYPELMSIGAGVHLGDFSRIITGFHSSSGYVSGKIEVQDNSVIGSQSLILPGSLVQKNVILGALSVAPMNSTLQEGGVYIGSQTQVVIRNSVKNAYDEGIEEMDMVSKKKLGNLVQKNDSQKVTLTRTWYQNFSALFTQPLLQTVLPHMVLGLAIFPPLNCVVYLKSAKKLPIYWLLPLFWVLSGALAALACVMAKWILVGRKKAGETVPIWSQRITLDSTWQAIRTLVGDYFMDMTCGSFWFVMWMKLMGADVDMEHAVYVDSMGALLNPEMVKIERGGCVGREALLFGHVYEGGGMVKFGKIKIGEDGFVGSRAVAMPGVQLENEGNLSALSLAMKEEIIRSR 1968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00548 1968 Pfam NAD(P)-binding Rossmann-like domain 26 92 - -
Cca04g00548 1968 Gene3D - 1109 1190 IPR036736 -
Cca04g00548 1968 SUPERFAMILY Trimeric LpxA-like enzymes 1353 1432 IPR011004 -
Cca04g00548 1968 Gene3D - 94 202 - -
Cca04g00548 1968 Gene3D - 303 396 - -
Cca04g00548 1968 SUPERFAMILY Trimeric LpxA-like enzymes 1605 1709 IPR011004 -
Cca04g00548 1968 Gene3D Hexapeptide repeat proteins 1333 1434 - -
Cca04g00548 1968 Pfam Phosphopantetheine attachment site 1123 1187 IPR009081 -
Cca04g00548 1968 Gene3D - 481 952 IPR042099 -
Cca04g00548 1968 SUPERFAMILY ACP-like 1116 1198 IPR036736 -
Cca04g00548 1968 Gene3D Hexapeptide repeat proteins 1593 1734 - -
Cca04g00548 1968 PANTHER AMP-BINDING ENZYME 1 1738 - -
Cca04g00548 1968 PANTHER AMP-BINDING ENZYME 1739 1968 - -
Cca04g00548 1968 CDD FAAL 499 1072 IPR040097 GO:0008610
Cca04g00548 1968 Gene3D - 23 446 IPR036188 -
Cca04g00548 1968 PANTHER AMINE OXIDASE 1 1738 - -
Cca04g00548 1968 PANTHER AMINE OXIDASE 1739 1968 - -
Cca04g00548 1968 Pfam AMP-binding enzyme 525 958 IPR000873 -
Cca04g00548 1968 SUPERFAMILY FAD/NAD(P)-binding domain 20 271 IPR036188 -
Cca04g00548 1968 SUPERFAMILY Acetyl-CoA synthetase-like 493 1076 - -
Cca04g00548 1968 PRINTS Adrenodoxin reductase family signature 23 45 - -
Cca04g00548 1968 PRINTS Adrenodoxin reductase family signature 47 60 - -
Cca04g00548 1968 ProSitePatterns Phosphopantetheine attachment site. 1147 1162 IPR006162 -
Cca04g00548 1968 SUPERFAMILY Trimeric LpxA-like enzymes 1854 1961 IPR011004 -
Cca04g00548 1968 Gene3D - 953 1081 IPR045851 -
Cca04g00548 1968 ProSiteProfiles Carrier protein (CP) domain profile. 1118 1192 IPR009081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00548 Cca-Chr4 5434327 5443116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00548 675 1073 Monolignol Biosynthesis Gene Families AT1G20480 25.366 8.29e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00548 - - adu:107477067 2905.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00548 04 5434327 5443116 Cca04g00548 04 5434327 5443116 ECH
Cca10g00345 10 3667591 3676046 Cca04g00548 04 5434327 5443116 PCT