Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00536 ATGGACTCCGAAGATGATATGCTCGACGCCAACGACCTCGACTCCCTCGACGACGATTTCTACAGCGGCGATACCGACGCTGCTCCCATCGACTACTACACCGACTACGATGACGACGCCGATGATTACTTCGACGACGCCCACAGAATTGACTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAATCCGATATACGACTAAGACAGGAAGATGACATCACTAGAGTAGCAACTGTTCTTTCTATATCAAGAGTTCTTGCAAGCATACTACTCCGTCACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACGAGTCCGAAAAGCAGTTGGTTTGTTGGAGAATCCAGTTGTCCAGCATACTGACACTACAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCTTGCTAGGATTAAAATGGCTCCCTGTGGTCATCCCTACTGTATGTCTTGCTGGGAAGGCTATATTAGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCCGCTGTTGGTCAAGATATGATTAATCTTATAGCATCCGAAGAAGATAAGCAGAAGTATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTTGTGGAAACTATGATGTCTCTTGCCTATGTTCACATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTTGACTGTAGCACTGTGGCAACATGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCCAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGTATGCACATAACATGCACACCGCCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCGTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTCAGTGACATACAGTGTCAGCCTGAATCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAAATAATTGAGTGTAGACGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTACCGGACAATGAGCATGCTAAAAAACAGTTCTTTGAGTACTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCTGAAAAGGAACTACAGCCATTCCTATGTGGAGATGATCCATCCAGAGAATTCAATGACTTCCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTAGCTGATGTGGATAGTAATGGAGGTGGCTTAAGCAGAGCAACGAGTTCAAAAAATGGCGCTGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGAAGTTTTCGAAGCAGCATGTCGAGCAGAATGAATGATGATGGTCACTGGTGTTGCGAGCATTGTACCTATGCAAATGTTAAATCTGCCTCCACATGCCAGATGTGCTATCAACAGCGTCGATGA 1767 0.4426 MDSEDDMLDANDLDSLDDDFYSGDTDAAPIDYYTDYDDDADDYFDDAHRIDSRRPEQNFTILKESDIRLRQEDDITRVATVLSISRVLASILLRHYNWSVSRVHDAWFADEERVRKAVGLLENPVVQHTDTTELTCGICFENYPLARIKMAPCGHPYCMSCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMINLIASEEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSCGNYDVSCLCSHSFCWNCTEEAHRPVDCSTVATWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCGDDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGGGLSRATSSKNGAGSSKGRGGRGKGSFRSSMSSRMNDDGHWCCEHCTYANVKSASTCQMCYQQRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00536 588 MobiDBLite consensus disorder prediction 522 555 - -
Cca04g00536 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Cca04g00536 588 ProSiteProfiles TRIAD supradomain profile. 132 346 IPR044066 -
Cca04g00536 588 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Cca04g00536 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Cca04g00536 588 SUPERFAMILY RING/U-box 206 275 - -
Cca04g00536 588 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 -
Cca04g00536 588 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 -
Cca04g00536 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 536 - -
Cca04g00536 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Cca04g00536 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 536 IPR031127 GO:0004842|GO:0016567
Cca04g00536 588 SUPERFAMILY RING/U-box 287 335 - -
Cca04g00536 588 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g00536 588 SUPERFAMILY RING/U-box 131 217 - -
Cca04g00536 588 CDD RING-HC_RBR_TRIAD1_like 136 186 - -
Cca04g00536 588 SMART ibrneu5 281 342 IPR002867 -
Cca04g00536 588 SMART ibrneu5 205 268 IPR002867 -
Cca04g00536 588 MobiDBLite consensus disorder prediction 524 538 - -
Cca04g00536 588 Gene3D - 264 519 - -
Cca04g00536 588 Pfam Ariadne domain 355 516 IPR045840 -
Cca04g00536 588 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00536 Cca-Chr4 5237350 5245462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00536 17 587 ARIADNE family AT1G65430 69.896 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00536 K11968 - gmx:100795162 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00338 10 3560337 3567841 Cca04g00536 04 5237350 5245462 PCT