Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00535 ATGGGAAGCTGCGTGTCATCACAAGGAGGGAAGAGGAAGAGGGCGGCAAAGCAGCCCTACAAGACCGCCACGCCGAAAGGGTATGAGGCGGCACGGCGGTCGAGCGTGGTGGCGGCGCGTAGGTCGAGCGTGACGGTGCGTCCGCCGGTAAACGTGGTGGCGGACCCGAGTCCGGGGAACATATTCGATAAGTACTCGTTTGGGAAGGAGTTGGGGAGGGGAGAATTCGGTGTGACGCACCGTGTGGTGAACGTGGAGAGTGGGGAGGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGATGTGCAAGACGTGAGGAGGGAGGTGCAGATCATGAAGCACTTGCCTCAGCATCCCAACATTGTTGCATTCAAGGAGGCTTATGAGGACAAAGATGCCGTTTACCTTGTTATGGAGCTTTGTGAAGGTGGAGAACTCTTTGATAGGATTGTGGCTAAGGGTCATTACACCGAACGTGCTGCTGCTAATGTTACCAAGACCATACTTGATGTTTGCAAGGTGTGTCATGAGTACGGAGTAATACACAGGGACTTAAAACCTGAAAACTTCTTATTTACAGATGGAAGCGAGTCTGCATCATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGTGGAGGGAGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTGAGACGTAACTACGGACCAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTACATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCTCAGGCGATCATCAGGGGTAAAGTAGACTTCACAAGAGATCCTTGGCCTAAAGTTTCAGATGAAGCAAAACATCTTGTTAAGCGCATGCTTGATCCAAATCCATTCACCCGGATAAAAGTTCAAGAAGTTCTTGATCATTCCTGGATACAACATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGGATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAAGAAGGTTCTTAGAGTGGTAGCTGATAACCTACCAGATGAGCAAATTGATGTGATTAAGAAAATGTTCGATATGATGGATAAGGACAAAAATGGAAACTTGTCATTTGACGAGCTCAAAGATGGCCTTTCAATGATTGGACACGCCCTTCCTGATACTGATGTCCAAATGTTAATGGATGCTGCGGATATTGATGGAAACGGCACCCTCAATTATGAAGAGTTCATCACAATGAATGTTCATCTGAGAAAGATCGAAAGCGATGAGCATCTCTCTGAAGCATTCCGTTACTTTGACAAGAACCAGAGTGGATATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCAGATGATGACTCGGAAGCCAGTAACGACCAAGTGATCAAAGACATTCTAAATGACGTTGACTTGGACAAGGACGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTCGCCAGTATTCAAGAGCATTGCTAAATGCATTAAGCTTCAAGATGTTTAAAGACACATCTAACAAAACTGTAGACTTATCTAGCAAATCTTTTAAGTTTAACTAA 1647 0.4536 MGSCVSSQGGKRKRAAKQPYKTATPKGYEAARRSSVVAARRSSVTVRPPVNVVADPSPGNIFDKYSFGKELGRGEFGVTHRVVNVESGEAFACKKIAKTKLRTEIDVQDVRREVQIMKHLPQHPNIVAFKEAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILDVCKVCHEYGVIHRDLKPENFLFTDGSESASLKSIDFGLSTFYVEGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIRGKVDFTRDPWPKVSDEAKHLVKRMLDPNPFTRIKVQEVLDHSWIQHREHGRTISLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDVIKKMFDMMDKDKNGNLSFDELKDGLSMIGHALPDTDVQMLMDAADIDGNGTLNYEEFITMNVHLRKIESDEHLSEAFRYFDKNQSGYVEFEELKDALSDDDSEASNDQVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDTSNKTVDLSSKSFKFN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00535 548 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Cca04g00535 548 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Cca04g00535 548 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00535 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 521 - -
Cca04g00535 548 CDD EFh 442 505 IPR002048 GO:0005509
Cca04g00535 548 SUPERFAMILY EF-hand 362 504 IPR011992 -
Cca04g00535 548 CDD EFh 371 430 IPR002048 GO:0005509
Cca04g00535 548 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Cca04g00535 548 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00535 548 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Cca04g00535 548 SUPERFAMILY Protein kinase-like (PK-like) 61 324 IPR011009 -
Cca04g00535 548 CDD STKc_CAMK 64 322 - -
Cca04g00535 548 Gene3D Transferase(Phosphotransferase) domain 1 151 331 - -
Cca04g00535 548 Pfam EF-hand domain pair 441 505 IPR002048 GO:0005509
Cca04g00535 548 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00535 548 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cca04g00535 548 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Cca04g00535 548 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Cca04g00535 548 MobiDBLite consensus disorder prediction 1 28 - -
Cca04g00535 548 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Cca04g00535 548 Gene3D - 332 507 - -
Cca04g00535 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Cca04g00535 548 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Cca04g00535 548 Pfam EF-hand domain pair 383 430 IPR002048 GO:0005509
Cca04g00535 548 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Cca04g00535 548 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 43 521 - -
Cca04g00535 548 SMART efh_1 442 470 IPR002048 GO:0005509
Cca04g00535 548 SMART efh_1 479 507 IPR002048 GO:0005509
Cca04g00535 548 SMART efh_1 370 398 IPR002048 GO:0005509
Cca04g00535 548 SMART efh_1 406 434 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00535 Cca-Chr4 5228045 5233433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00535 1 532 EF-hand Containing Proteins AT2G31500 65.631 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca04g00535 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00535 K13412 - gmx:100801716 954.51