Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00530 ATGTATCCAAAGCGGTCAGGCCAAGATGGCCCTGTTTCCGGACAGGTGCGCTCAAGTGATAGGATCAAGACAAGGCCAAACGTTTATGGTCGGCCATTCTTGTATTATAACCAGAATCTTAGGCGCACCAGGAAAAGCAAGATGAAAACAAGGACTGCTGCTTCACAGATTGCTAAAATGTTGCGTCCAGGGAATCGAAAATCACAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACGGACAGCTCTGGAGCTGAAGATGAAGACTTAATGAGACCTAAATATCCACCCCTGAGAAGTCGGATTAACAATAGTGTCAGACAGGATGGTTTGATGTCTACTAAGCGCAAAAGAGCAGTGGAGACTAAACCAACACCCCGACGTGAAGGTCTACGTCCTCGTCGTTCAAAGGGTGCTGCAATAGAGCGATTAATTTCAGAATCAGATGATGAGCAAGACCTTTCAGAGGAAAAGGTTGATCAGGATGAAACAGAAAATGGAAATGACATCGAGGAAAATGATGCAGATGATGGCCAAAATGAGATtgagggggacgccgagggtgaagatgaaggtgaggatgaaggtgatgaagatggtgatgatgaagAGGGTGAAGAAGAGCAGGAGGGAAGAAGGCGGTATGATCTTCGAAATCGTTCAGATGTCCGGAGATTTTCTATGGAGGAAGGGAAGGCCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTTAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAGCAGATCTGGTCCGCCTTGGCTTTTTGGAGGGCTAGACATGCATGGAACAACAGCTTTCGGGTTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTAGTCTTACTTCTGGGATTCAAACTGCCGGACCAAGCTCTAAGGGTGGGGCAGATATCCAACCCCTACAGGTTGATGATAGTGTTAGTTTTGAAGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTATCACATAACTCCACCTAGGGGTGTGTTGTTATGTGGCCCCCCTGGCACCGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCGGATGTGCTTAGCAAGTGGGTTGGTGAGGCTGAAAGACAACTGAAACTTCTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCAGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATCGTCTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGTGAATTTAATTTCCCGTTGCCTGGTTGTGAGGCGCGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAGAATCCTCCTCCAAATGAGCTTAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCTATTCGTGCATTCCGGCAAAAGTATCCACAGGTTTATACAAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCCAGACCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAATCCATGAGTATTATATCTGATATTTTCCCTCCAGCTTCTGTTGCATCAGAGTTAACTAAACTTTCAATGCTTTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCCAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCGGTGCATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCGGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCGTCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAGACTGCTCATGAGCAACTCAGGGCTGTTCTCCTGACTTTACTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTGCACTTACTGAAGTTGAGGAAGTGCCTCCTTCACTTTTCCCTCATCGCTCAGTTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCGATATTGTTGGAGGGAATCAACAAGAAAACACAGGATACAGGAGGCCTCCCTGAACTTCCCAAGGCACCAAAATTGGCTAGTGGACCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCTCTTCGCAGGTTGCGAATGTGCCTTAGAGATGTTTGCAACCGGGTACTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTATCAGACGAAGATGCACCAAACTATCGCTCAATTATACAGAACCCAATGGACATGGCTACCATCCTTCAGCATGTTGATAATGGCGACTATATTACATGTGCTGCATTCATGCAGGACATTAATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTATAATGGAGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCAACATTCCCTGCTACTCCTGTTGTGCAGCTGGGTGCTGGTACTAGGATGAGTGCTCGGCTTCGTCATGTCCAACCAGAGGTTAATATGGACCAGAGTTATGAAGTATTGAAGCGAACTAAGAAAATTGCTGAAGCGCATGCAGAAGACAAGTCACAAGAAGATTCCGTACCGGAAAAGTCTCCCCAGGAGAATCTGGCAAATCACACAAATTCTGAAGGGCCGGAACCTGTGTTAATTGAAGGAAATTTGGGTGGAACTTGTATAAATAGCCCTGCTGATGGCAACAGTTCTGATGATGTCACAATGCTAGATGGTGAATTTACAAGAGAAGTGGAGTCTGTCAAGCAGCTTTATGTGAAGCGTAGTGAAAATTATAGCATTCCACAACTTGAAAGGCTTTACACAAGAATTATGAAGGGCGTGTTTGAAACCAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTTTAA 3600 0.4342 MYPKRSGQDGPVSGQVRSSDRIKTRPNVYGRPFLYYNQNLRRTRKSKMKTRTAASQIAKMLRPGNRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPKYPPLRSRINNSVRQDGLMSTKRKRAVETKPTPRREGLRPRRSKGAAIERLISESDDEQDLSEEKVDQDETENGNDIEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQEGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALASLTSGIQTAGPSSKGGADIQPLQVDDSVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKNPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKSMSIISDIFPPASVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALTEVEEVPPSLFPHRSVYQVNMPCAKDRTLFFNLLIEAAMSILLEGINKKTQDTGGLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRVLYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATILQHVDNGDYITCAAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGAGTRMSARLRHVQPEVNMDQSYEVLKRTKKIAEAHAEDKSQEDSVPEKSPQENLANHTNSEGPEPVLIEGNLGGTCINSPADGNSSDDVTMLDGEFTREVESVKQLYVKRSENYSIPQLERLYTRIMKGVFETKNKGVNGDLKSSVLKFLLNFVEDDANF 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00530 1199 Gene3D - 888 1016 IPR036427 GO:0005515
Cca04g00530 1199 Gene3D - 552 637 - -
Cca04g00530 1199 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Cca04g00530 1199 Pfam AAA+ lid domain 578 615 IPR041569 -
Cca04g00530 1199 MobiDBLite consensus disorder prediction 166 223 - -
Cca04g00530 1199 SMART bromo_6 896 1003 IPR001487 GO:0005515
Cca04g00530 1199 MobiDBLite consensus disorder prediction 1072 1126 - -
Cca04g00530 1199 Pfam Bromodomain 913 977 IPR001487 GO:0005515
Cca04g00530 1199 MobiDBLite consensus disorder prediction 1 28 - -
Cca04g00530 1199 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Cca04g00530 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Cca04g00530 1199 Gene3D - 374 644 IPR027417 -
Cca04g00530 1199 MobiDBLite consensus disorder prediction 128 165 - -
Cca04g00530 1199 MobiDBLite consensus disorder prediction 44 291 - -
Cca04g00530 1199 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Cca04g00530 1199 PANTHER BNAC08G44480D PROTEIN 1 1194 - -
Cca04g00530 1199 CDD AAA 412 551 - -
Cca04g00530 1199 PANTHER AAA DOMAIN-CONTAINING 1 1194 IPR045199 -
Cca04g00530 1199 Gene3D - 682 844 IPR027417 -
Cca04g00530 1199 MobiDBLite consensus disorder prediction 224 254 - -
Cca04g00530 1199 MobiDBLite consensus disorder prediction 65 80 - -
Cca04g00530 1199 CDD Bromo_AAA 896 1006 - -
Cca04g00530 1199 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Cca04g00530 1199 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Cca04g00530 1199 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Cca04g00530 1199 SUPERFAMILY Bromodomain 894 1008 IPR036427 GO:0005515
Cca04g00530 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 915 IPR027417 -
Cca04g00530 1199 SMART AAA_5 412 553 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00530 Cca-Chr4 5181550 5188057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00530 362 616 Calmodulin-binding Proteins AT3G56690 36.293 6.71e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00530 K22531 - gmx:100787765 2135.53