Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00526 ATGGGACACAGTTCCAAGAAGAAGAAGCGCGGAGGCGGGAGCAGTCGCCGGAGCAAGGGAAGAACGCAGTCCAAAGATCACGCTTCTCAATTCGCCGACGACGATTACGACCAGCTTTCCGAAGAGATTACCGCATTATGCGCAATTTTCGAAGAAGACTGCAAAATTCTTCCAGGATCGCCTCCTCGAGTAGTTGTTAATCTCAGGCCTTACTCAAAGGGCATGGGTTATGAGGACCTAGATCTTTCTGCTGTTCTAGTTGTCAGGTGCTTGCCTGGATATCCCTTCAAGTGCCCCAAGTTGCAGATTACACCGGAGAAAGGCTTATCAGAAGCTGATGCTAATAAGCTTTTGTCTCTGCTCAATGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATTTGGTAGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCCAAATCAAATGATTCTAAGCTTTTAAACTCGACTGTGGAAAGCAATGAGGAGTTGTTTCCCAAGGATATGGCATCTTTAAATAAGAAGGGTTATTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAAACATGGAGTTGGGGTTTTGGGATAGATGAAACTGCTGGAAAAAGTACTTCTCTTCCTCCGTCTAAGTTGGATGTCTCAAAACCACATTTTGAGGCTCAGGAGAAGAAACCTGATAGTAAGGAAACACCGTTAGTAATGCAAGACCTTCCTGCCAAATTGGATACTGTTGGAGAAGTTAGTGAAGACTGCAACAATAGTTTATCTTTGACTTCTTCAAGTAGATCTTTGGTGGAGGATTTTGTAGGGAACAACAATGAAGAAGATAATGAAGGTATTAAAGAAAGCAAGTCTTTTGAGTCTCTGTCCTCTGCATCCTTGCCTCATCACCAACCATCTCAAACATTTGAAAGGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAAGGGAACGTTGGCTGAATGTTTGCCACAAGTGGTAACAGAGCTGAACAATTTAGGGATCATTTCTGATTCAGCACGTGACATGGCATCTGAACCACCTTCCATTTTCAACCAAACCTTTGATCGTGTTTTCCAGAAACACCTGGCTTCATCCAAAATATCTCAATTTTGGAAACCTGATCTTGGAGGCTCAAACACAGTTCCCCATAGTTCTCGATATTTGAATGATTTTGAGGAGCTACGGCCTCTTGGTCATGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAGTAAAGAAAATTCACCTCAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTGCAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCTGCTTGGGGTTCAAAGACTACAGGAAGCTCTACTTTCAGCTATAAAGCTGCAACCTCCAATGATGCCATTGGGCATGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAGTACTGTCCGAGGACACTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCTTGGCATTTGTTTCGCCAAATAGTGGAAGGCTTGGCACACATACATGGGCAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCACGCAATGATATTAAAATTGGTGATTTTGGTCTGGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTGGGCCATCCTGCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTCGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGACATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGAAATGTTATTTTATCTGATCTGAAATTGAAAGGGGAAGTTCCACCTGCTTGGGTTGCTGAATTCCCAGAACAGAAATTGTTGCTGCAGCGGTTAATGTCTCCGGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCCACGAATGGAGTCTGAATTATTGGATGATATCCTACGAACTATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAATGCTATCTTTGACGAAGAGATGTTAAGCACAAAACACATTCGTCAGGTTGGTAGATTAGGATCAGTTGGGGATAACAGTTCATCCATTCAGTACACAGAATTCGAAACTGAGGTTCGAGATTATGTTGTAGAAGTTAACAGGGAAATTTTTCGACAGCATTGTGCAAAACACCTAGAAATATCAACGATGCGATTATTGGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTAACCAATGGAGGAGACATGCTTGAACTTTGCCATGAGTTGCGTTTGCCTTTTGTGAACTGGATTATCTCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTCTTCAGAAGAGCAGTTGGACATTCATCACCAAACCGCTATCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGCAGACTCATGTGACATTCATCTCAACCACGGTAACCTTCTTGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACATAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCGCAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGACAGCTTTTGCAGGAACTGAATTTAGCAGATGCTATGGTAAATAGGTTACAAACTGTAGGTTTAAGATTCTGTGGATCTGCAGATCAGGCACTCCCCCGATTAAGAGGAGCTCTTCCATCTGATAAACGGACATTCAAGGCACTTGATGAATTGTCTGAGCTTGTCAGTTTCCTGAGAATTTGGAGGATTGACAAAAATATCTATATAGATGCATTAATGCCACCAACAGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGCCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGACTATTTGCTTCATCAGTTGTGGAGTAGTGACTATAAAGGAAATCCTCCCACTGGTGTGGGGACTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATTTCAAGCCCAATAGAAGCGAAGCCAGCACCAATATTCTTGTCTGTTCTAGAGGAGGAGGTGGCCTGCTGGTAGAGCGCATGGAACTAGTTGCTGAATTATGGGAGGAGAACTTTAAGGCTGAATTTGTTCCTACCCCTGATCCAAGTCTTACAGAGCAGTATGAATATGCTAATGAACATGGTATCAAATGTCTTGTTATCATCACAGATACAGATTTCTCCTTCACAGGTTCTGTTAAGGTTCGACACCTTGAACACAAGAGGGAGAAAAATGTTGAGAGAAAAAACCTTGTCAAATTTCTATCGGATGCTATGGCAACACAGTTTAGAAATCCCTCTATTTGGATTTGA 3663 0.4185 MGHSSKKKKRGGGSSRRSKGRTQSKDHASQFADDDYDQLSEEITALCAIFEEDCKILPGSPPRVVVNLRPYSKGMGYEDLDLSAVLVVRCLPGYPFKCPKLQITPEKGLSEADANKLLSLLNDQATLNAREGRVMIYNLVEAAQEFLSGIEPIAKSNDSKLLNSTVESNEELFPKDMASLNKKGYFVYGFIDLFSGYGETWSWGFGIDETAGKSTSLPPSKLDVSKPHFEAQEKKPDSKETPLVMQDLPAKLDTVGEVSEDCNNSLSLTSSSRSLVEDFVGNNNEEDNEGIKESKSFESLSSASLPHHQPSQTFERDLIMVHMLRLVCASKGTLAECLPQVVTELNNLGIISDSARDMASEPPSIFNQTFDRVFQKHLASSKISQFWKPDLGGSNTVPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIHLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSAWGSKTTGSSTFSYKAATSNDAIGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERNVILSDLKLKGEVPPAWVAEFPEQKLLLQRLMSPAPSDRPSATELLQNAFPPRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRQVGRLGSVGDNSSSIQYTEFETEVRDYVVEVNREIFRQHCAKHLEISTMRLLDCPQFNRNAVKLLTNGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGNLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLADAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELVSFLRIWRIDKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLLHQLWSSDYKGNPPTGVGTSLALETIIQNCPVDFKPNRSEASTNILVCSRGGGGLLVERMELVAELWEENFKAEFVPTPDPSLTEQYEYANEHGIKCLVIITDTDFSFTGSVKVRHLEHKREKNVERKNLVKFLSDAMATQFRNPSIWI 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00526 1220 PANTHER HISTIDYL-TRNA SYNTHETASE 20 1220 - -
Cca04g00526 1220 SUPERFAMILY Class II aaRS ABD-related 1116 1210 - -
Cca04g00526 1220 Pfam Histidyl-tRNA synthetase 856 1097 IPR041715 -
Cca04g00526 1220 MobiDBLite consensus disorder prediction 295 309 - -
Cca04g00526 1220 MobiDBLite consensus disorder prediction 215 244 - -
Cca04g00526 1220 ProSiteProfiles Protein kinase domain profile. 407 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00526 1220 MobiDBLite consensus disorder prediction 226 241 - -
Cca04g00526 1220 Pfam RWD domain 38 147 IPR006575 GO:0005515
Cca04g00526 1220 MobiDBLite consensus disorder prediction 281 309 - -
Cca04g00526 1220 CDD STKc_EIF2AK4_GCN2_rpt2 400 707 - -
Cca04g00526 1220 PANTHER EIF-2-ALPHA KINASE GCN2 20 1220 - -
Cca04g00526 1220 Pfam Protein kinase domain 407 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00526 1220 Gene3D Ubiquitin Conjugating Enzyme 28 156 IPR016135 -
Cca04g00526 1220 ProSitePatterns Protein kinases ATP-binding region signature. 413 437 IPR017441 GO:0005524
Cca04g00526 1220 Gene3D Bira Bifunctional Protein; Domain 2 769 1103 IPR045864 -
Cca04g00526 1220 Gene3D Phosphorylase Kinase; domain 1 395 523 - -
Cca04g00526 1220 MobiDBLite consensus disorder prediction 1 33 - -
Cca04g00526 1220 Gene3D - 1111 1210 IPR036621 -
Cca04g00526 1220 SUPERFAMILY Class II aaRS and biotin synthetases 771 1099 IPR045864 -
Cca04g00526 1220 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Cca04g00526 1220 SMART RWD2001b 41 150 IPR006575 GO:0005515
Cca04g00526 1220 SUPERFAMILY Protein kinase-like (PK-like) 403 716 IPR011009 -
Cca04g00526 1220 MobiDBLite consensus disorder prediction 1 16 - -
Cca04g00526 1220 Pfam Anticodon binding domain of tRNAs 1115 1212 IPR024435 -
Cca04g00526 1220 MobiDBLite consensus disorder prediction 19 33 - -
Cca04g00526 1220 SUPERFAMILY UBC-like 36 147 IPR016135 -
Cca04g00526 1220 Gene3D Transferase(Phosphotransferase) domain 1 526 718 - -
Cca04g00526 1220 ProSitePatterns Tyrosine protein kinases specific active-site signature. 562 574 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00526 Cca-Chr4 5131584 5149274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00526 404 710 CBL-interacting serine-threonine protein kinases AT5G45820 27.532 8.32e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Cca04g00526 Pkinase 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00526 K16196 - gmx:100797996 2209.49