Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00521 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACTGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTGGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGGCAGCTTTTATATTTTGTGTTGAGGACAGAGCACTGTTCTGCAAAGAGTGTGACGAACCGATTCATGTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCAGGGTGGCGTTGGGTTCTAAATGCACCAAAAGCAATGAAAAGGGTAACGTGGAACCATCTAATCCAAATGCACAACAAGTTCCTGTTAAACTTCCTTCTCACCAAGTGCCTAGCTTCACATCCTCTTGGGTTGTTGATGACTTGTTGGAATTAGCAGACTTCGAATCACCACACAAAAAGCAATCCCTGGAGTTTGGAGAGCTTGAATGGCTTACAGATGTGGGGCTTTTCAGTGAACAAATTCCTCAAGAAGCTTTAGCAGCGGCTGAAGTTCCTCAGCTTCCAGTGACACATGCTAGCAGTGTTGCCTTACACAAAATCCCTAAATCCGTTATGTCTTTCAAAAAGCCTAGGGTTGAAGTCCTGGATGAAGATGACGATGAGTACTTCACTGTACCTGATCTTGGTTAA 717 0.4463 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKECDEPIHVAGSLSANHQRFLATGIRVALGSKCTKSNEKGNVEPSNPNAQQVPVKLPSHQVPSFTSSWVVDDLLELADFESPHKKQSLEFGELEWLTDVGLFSEQIPQEALAAAEVPQLPVTHASSVALHKIPKSVMSFKKPRVEVLDEDDDEYFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00521 238 CDD Bbox1_BBX-like 57 98 - -
Cca04g00521 238 Gene3D Classic Zinc Finger 1 92 - -
Cca04g00521 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca04g00521 238 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 238 - -
Cca04g00521 238 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Cca04g00521 238 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cca04g00521 238 CDD Bbox1_BBX-like 5 47 - -
Cca04g00521 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cca04g00521 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Cca04g00521 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cca04g00521 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00521 Cca-Chr4 5093463 5097773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00521 1 161 Orphan Transcription Factor Family AT1G06040 67.262 1.03e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca04g00521 zf-B_box 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00521 - - gmx:100779183 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00321 10 3417716 3422211 Cca04g00521 04 5093463 5097773 PCT