Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00518 ATGGACAAGGACAGATCAGAATCATCCTCTCCGTCACCCTTTCCGACCACCGCCACGTCAGACTCCGACGACATCAGCGAAAAGCCCCACAGAGGCCACCGCCGCGCCCATTCCGAGATTCTCACCCTTCCCGAGGACATCACCTTCGACGTGGACCACCACTTGCTCAACCTCTCCCTCCACTTTGATCAACACAATTCCTCTCAAGGTAACAACACCAACACCAACAATGTCGCTAGGGTTAGACACCACCATAGCCACTCCATCGATGGTTCCATCCAACCGGAGATGCTTCTTTCCGGCGCCGACGACGTCTCCGCCGTCGATACTAAGAAGGCAGTATCTGCTGCCAAGCTTGCCGAGCTTGCCTTAATTGATCCCAAGCGGGCCAAAAGGATATGGGCAAACAGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATACGTTACATTTCTGAGCTTGAAGGGAAAGTGCAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAGTTAACTCTCTTGCAAAGAGATTCAAATGGACTGACTACTGAGAACAGCGAGTTGAAATTGCGGTTGCAAACCATGGAGCAACAGGTCCACTTGCAAAATGCATTAAATGATGCATTAAGAGATGAAATTCAACATTTGAAAGTACTGACTGGACAAGTTGTGCCAAATGGAGGACCTATAAATTTTTCTTCATTTGGTGGGGGGCAACAATTCTATCCCAACAATCAGGCCATGCACACTCTTTTAGCTGCACAACAGTTTCAACAACTTCAAATTCATTCCCAGAAGCAGCAACAACAGTTTCAGCAGCATCAACTTTAG 834 0.4784 MDKDRSESSSPSPFPTTATSDSDDISEKPHRGHRRAHSEILTLPEDITFDVDHHLLNLSLHFDQHNSSQGNNTNTNNVARVRHHHSHSIDGSIQPEMLLSGADDVSAVDTKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKIRYISELEGKVQTLQTEATSLSAQLTLLQRDSNGLTTENSELKLRLQTMEQQVHLQNALNDALRDEIQHLKVLTGQVVPNGGPINFSSFGGGQQFYPNNQAMHTLLAAQQFQQLQIHSQKQQQQFQQHQL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00518 277 CDD bZIP_plant_RF2 129 180 IPR044759 GO:0003700|GO:0006355
Cca04g00518 277 SUPERFAMILY Leucine zipper domain 128 178 IPR046347 GO:0003700|GO:0006355
Cca04g00518 277 Pfam bZIP transcription factor 128 186 IPR004827 GO:0003700|GO:0006355
Cca04g00518 277 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 74 273 - -
Cca04g00518 277 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 50 - -
Cca04g00518 277 Gene3D - 127 180 - -
Cca04g00518 277 SMART brlzneu 124 188 IPR004827 GO:0003700|GO:0006355
Cca04g00518 277 MobiDBLite consensus disorder prediction 23 39 - -
Cca04g00518 277 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 126 189 IPR004827 GO:0003700|GO:0006355
Cca04g00518 277 MobiDBLite consensus disorder prediction 8 22 - -
Cca04g00518 277 MobiDBLite consensus disorder prediction 1 39 - -
Cca04g00518 277 Coils Coil 151 213 - -
Cca04g00518 277 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 50 - -
Cca04g00518 277 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 74 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00518 Cca-Chr4 5060626 5064474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00518 5 255 bZIP Transcription Factor Family AT1G06070 57.516 1.35e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g00518 bZIP_1 1.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00518 - - gsj:114377908 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00317 10 3382133 3385036 Cca04g00518 04 5060626 5064474 PCT