Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00516 ATGCCGCTTCCGACGAAACCAACGAGGGAGTCCGACGACTCGTCGATTCCCTCGAACAACCTGTGGGTCGGAAACCTGGCGCCGGACGTCACCGACTCCGATCTGATGGAGCTCTTCGCCAAGTACGGCGCACTCGACAGCGTCACTTCGTATTCCTCTCGCAGCTACGCCTTCATCTTCTTCAAGCGCGTCGAAGACGCCAAAGCCGCTAAGAACGCTCTCCAAGGCACCACTCTCCGCGGCAGTTCCCTTAAGATCGAATTTGCCAGACCGGCAAAGGCATGTAAACAGCTTTGGGTTGGTGGTGTTAGCCCAGCTGTTTCAAAGGAAGAATTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGACTTTAAGTTCTTCAGAGATCGTAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAGATCATGAATGGGAAACGAATTGGTGGAGAGCATATTCGTGTTGACTTCCTTCGGTCACAATCAACAAAAAAGGATCAGCTTGATTATGGACAATTTCAAGGAAAGGGTTTGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGAAAAGGTGATGGTCAACCGAGTAATATCTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGACGAGCAAATGCTTCACAATGCCATGATTTTATTTGGTGAAATCGAGAGAATAAAGAGTTTTCCTTTGAGGAATTATTCAATTGTTGAGTTTAGAAGTATTGATGAAGCTCGGCGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCGAGCAGTGACATAGTGCCTGGCAATGATTACCCTGGTTTTTTCCCAGGAAATAATGGGCCGAGACCTGACATATTGCTGAATGAGCACGCATTTCGACCTATACAGATGGATGTATTTAGTCATAATCGTCCAGTGGCTCCTAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAATGTACCATTGCGACCTTTTGGTCCTCATGGTGGTGTTGAATCTGTTATTTCTGGCCCTGATTTTAATGAGATTAATGCGCTCCAGAAATTTCAGGATGGTAGCTCCAAGAATAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCCGCACCTGGGATGCTTTCTTCTCCTGCACCAGGTGTCAGGCTTCCAACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATCCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCTTTGCCTGTTGATGATGGCCCATTTCCTGTAAGGAATATGGATGATCGTGGGTCAGCTCTAGAACAAACGTATGGGATTGATCCAGCTATTGATGGAAGTGGTTCTGGTCCATATAGAAACGTTCAAGGAAGGAATCACCTGGGTTCAGTCAGCTCAAGGATTACAGCTGGAGGACATGGTTTCGGCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCCAAAGGGGGAACTCCTGTTTGTCATGCTAGATGCGTCCCTATTGGGAAAGGAATTGGGACTGAGCTTCCTGATATTGTTGATTGCTCAGCTAGGACGGGATTGGATATTCTCACAAAACAttttgctgatgctattggttttgatattgttttctttctgcCTGATAGTGAAGACGATTTTGCCTCATATACTGAATTCCTTCGCTATCTTGGTGCGAAAAATCGAGCTGGTGTTGCCAAATTTGTTGATAACACCACGTTATTCTTGGTGCCTCCTTCTGATTTTCTTACTAAGGTTTTGAAAGTTGCTGGACCTGAGCGTTTATATGGTGTGGTTCTTAAGTTTCCACCAGTGTCAAGTAGTGCACCGCTGCAACAGCCACCACATTTGCCTATACCTCCCCCTCAGTATATGCAGCAGATTCCCCCTTCACAGACTGAATATGGTATGATTCCTATGAAAGAGGAACAGGTTTTGCCGATGGATTATAACAGGTCGTTGCATGATGATTCTAAGCATCCTGCTAAACCAGTCTATCCACCTGCTGGTGGCCCCCCTTCAGTTCAGTCTGTGCCTCAAGATTATGCTCCTAATACTACTAATGTTGCTGGGTCTCAGGCTGGAGTTGCATTAACTCCAGAGCTTATTGCAACTTTAGCTTCTTTACTCCCTGCACAATCATCTGGCACTGATGGTGCCAAGTCAGCAATAGTTTCCTCAACCATGAAGCCTCCATTTCCTCCAGTTGCACCAAATGATGGAAATCAATCACATTTATGGAAACAGGACAACCAAATTGCAGATCAATCCACTCATCCTCCTCAACAACTGAGGACTATGTATAATGTTCACAATGCTCATTATCAGCCTTATCCACCAGCATCTGCTCCTGCTGGTAATGCTGCTCAAGTAGTTTCAAGCAGTTCTCATATTCAAGATACTGCTGCCAGCCTGCAGCAGCAAGGTGCTGCTTCATCAAGACACATGTCAAATTTCATGATTCCTACTCAAAGTGGCCAGGTAGCAGTATCTCCCCATGCCAATCATCATTATCAAGTTGAAGTCTCCCCCAACAATCAGAAAGGCTTTGGAGTGGGGCAGGGAACAGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTTTGGCTTTCCAGCAACCTAATAATTCTATTGCCTTTTCTAATCAAGTTACTAGTGCTAATCCTGCACAGCAGCAAACAGCCATGCCATATACAGTGGACCAATTAAACTCAGAGACCCCCAATCAGCAACTTCCTAATTTTGGAGTCGGTCAAGGCACATCAGAAGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCCGCCAATCTTCTTCACCAAATAcagcagcagcagcagcaAGCCCCAGGAGGACATGGTTCAGGAATTCAACAATGA 2997 0.4411 MPLPTKPTRESDDSSIPSNNLWVGNLAPDVTDSDLMELFAKYGALDSVTSYSSRSYAFIFFKRVEDAKAAKNALQGTTLRGSSLKIEFARPAKACKQLWVGGVSPAVSKEELEAEFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRIGGEHIRVDFLRSQSTKKDQLDYGQFQGKGLGPTDAYSGQKRPLHSQPPMGRKGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDIVPGNDYPGFFPGNNGPRPDILLNEHAFRPIQMDVFSHNRPVAPNNFPGQLPPSGIMGPNVPLRPFGPHGGVESVISGPDFNEINALQKFQDGSSKNNMGPNWKRPSPPAPGMLSSPAPGVRLPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDDGPFPVRNMDDRGSALEQTYGIDPAIDGSGSGPYRNVQGRNHLGSVSSRITAGGHGFGQPDIDHIWRGIIAKGGTPVCHARCVPIGKGIGTELPDIVDCSARTGLDILTKHFADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPPVSSSAPLQQPPHLPIPPPQYMQQIPPSQTEYGMIPMKEEQVLPMDYNRSLHDDSKHPAKPVYPPAGGPPSVQSVPQDYAPNTTNVAGSQAGVALTPELIATLASLLPAQSSGTDGAKSAIVSSTMKPPFPPVAPNDGNQSHLWKQDNQIADQSTHPPQQLRTMYNVHNAHYQPYPPASAPAGNAAQVVSSSSHIQDTAASLQQQGAASSRHMSNFMIPTQSGQVAVSPHANHHYQVEVSPNNQKGFGVGQGTDASVLYNSQAFQQPNNNSLAFQQPNNSIAFSNQVTSANPAQQQTAMPYTVDQLNSETPNQQLPNFGVGQGTSEVEADKNQRYQSTLQFAANLLHQIQQQQQQAPGGHGSGIQQ 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00516 998 MobiDBLite consensus disorder prediction 381 404 - -
Cca04g00516 998 CDD RRM3_Spen 98 167 - -
Cca04g00516 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Cca04g00516 998 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 998 - -
Cca04g00516 998 Gene3D - 4 93 IPR012677 -
Cca04g00516 998 Gene3D - 94 176 IPR012677 -
Cca04g00516 998 MobiDBLite consensus disorder prediction 639 659 - -
Cca04g00516 998 CDD RRM3_Spen 21 90 - -
Cca04g00516 998 MobiDBLite consensus disorder prediction 178 211 - -
Cca04g00516 998 MobiDBLite consensus disorder prediction 942 965 - -
Cca04g00516 998 SUPERFAMILY RNA-binding domain, RBD 193 293 IPR035979 GO:0003676
Cca04g00516 998 SUPERFAMILY RNA-binding domain, RBD 95 187 IPR035979 GO:0003676
Cca04g00516 998 Coils Coil 964 984 - -
Cca04g00516 998 Pfam SPOC domain 506 622 IPR012921 -
Cca04g00516 998 MobiDBLite consensus disorder prediction 639 656 - -
Cca04g00516 998 CDD RRM3_Spen 217 286 - -
Cca04g00516 998 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 998 - -
Cca04g00516 998 MobiDBLite consensus disorder prediction 681 716 - -
Cca04g00516 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 288 IPR000504 GO:0003723
Cca04g00516 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Cca04g00516 998 SMART rrm1_1 97 164 IPR000504 GO:0003723
Cca04g00516 998 SMART rrm1_1 20 87 IPR000504 GO:0003723
Cca04g00516 998 SMART rrm1_1 216 284 IPR000504 GO:0003723
Cca04g00516 998 SUPERFAMILY RNA-binding domain, RBD 10 92 IPR035979 GO:0003676
Cca04g00516 998 MobiDBLite consensus disorder prediction 432 451 - -
Cca04g00516 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Cca04g00516 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Cca04g00516 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Cca04g00516 998 Gene3D - 209 297 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00516 Cca-Chr4 5036173 5047971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00516 20 278 Eukaryotic Initiation Factors Gene Family AT2G23350 23.592 4.85e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00516 - - gmx:100777570 1753.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00316 10 3369064 3376237 Cca04g00516 04 5036173 5047971 PCT