Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00508 ATGGAAGACCATTTTCCCCCAAAGGGAAAGGAAATTGGCTATTGCACATCTCCTGGAGTTCAGTTGGAGGAATCAACATCTGTAGATGGTGGAACGAAAAATTCAGTTTCAGATGACATGTTTAGCTACTTCTCAGAGCTAATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCCCATCCTTGACTGATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCACCACCTGATGGATTGAATTTAGTGGAACATAGCAATGGTCCATTCTTTATGACAGAAGTTGGTGAAATTCACAATGATATGGAAAGTTCACCAAGTTGTGAGGAGAGAGTTATATTTCATCAAATGGACATCCAACTTGGGTTCTTAGATGATGCAAATAACTTAGATTCAAAACAAAATCATAATGGCACATCTCAGAAAATTAATACCTCAGACATGTGCAATTACATAATCTCAAGGTCTTCAGGAAGGTCACTTAATGATAGAATGCTGAGGGCCCTGTCCTCCTTTATGGAATCAGCTGATGCTGGAATGTTAGCACAAGTTTGGCTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGCAGAAGGAAAGCCAGGATCATGTCCAGGACTTCCGGCTCGCGTGTTTATATCGCATGTTCCTGAGTGGACCTCCAACGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCATGCAATGAATCATGAGATTCGTGGATCTATTGCTCTTCCTATATCTGATGAGAACTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAAAAGCCTAATTTTGACAGAGAATTAGAAATTGTTACTCATGCGCTCCAGCTTGTAAATTTAAGGACTACTACGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGCAATAAAAGATCTGCTTTAACAGAGATAATTGATGTTTTACGGGCCGTGTGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCATGTTGCTACAGAGAGGGAACGGGAGATGAAACTGAGAGAATAAGAATCAAAGAGGGTCGTACAAGTTCTAATGAAAAATGTGTACTATGCATTGAAGAATCAGCTTGCTATGTAAATGATGGAGCGGTAAGAGGATTTGTTCATGCATGCGTTGAGCATCATCTTGTGGAAGGGCAAGGTATAGCGGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGTTGAATATCCCCTTGTTCACCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATAAGGCTAAGGAGTACCTATACCAATGATGATGATTACATATTAGAATTCTTCCTGCCTGTTAATATGACAGGGAGTTCAGAACAGCAACTATTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGCAGGACTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGTATAGAAGGCTCTCAAGGTGGGTTTCCAAGGGAAAAAGTCTCGGGTATTTTTCCTTTGTCCAGGAGAAACTCTCAGATAACATTCATAAATGATGACCATGATTCGGTTCAGAAGATGTCCTTGAAGGTATCTAACCTGAAAAATAATGGAATTGAAGCTGCTCATAGCCAGGAAATGAATGGATCAAGAAAGCAGATTGAGAAAAAGAGATGCACTGTGGAGAAGAATGTTAGCTTGAGTGTACTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAGAGCATTGGTGTTTGCCCAACAACATTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCACGCAAGATCAATAAAGTAAATCGTTCATTAAAAAAGATACAAACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCCGGTGGATCAATCATGCAGGAAACTGAATCACATAAATATCTTCTATTTCCTGAGAAAAGTTCTGTGAAAGACCCTAAGCCTGCAACACAGAAAAAAATCTCAGTAGTTTCAGCGCCTGGTAGCACTAGTGAGAATTCAGCAATTAAGTTGGATGGTAATGACGTTGGTTTGGTGGGAAACCATCTTGTGCACTCAAGAAGTGTGCTAATATCTAGTACAAGTGAGGAAGAATTGAAGAAAAACAATGCGTATTCTGATGATTCAAAATCAATGGCCATGAATGATGATGGATCTTGCAAGAAAGCATGCCATTGGACAAACACTCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTTCTGATGAGGTCGAAGTTGGTGCAGATAGAGTAGAAGGAGCTGATGAACATAACCACCCTACTTCTTCAAGAACCACAGACTCATCCAATGGCTCTGGCTCAATCATGCATGGAAGCTCATCATGCTCTCAAAGCTTTGAGAACCATAAGCATTCAAAAGTCAAGTCAACTTGTGTTGATAGTGGGTCAAAAATTATTGTGAAAGCTGGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTTAAGCTATATGAAGAAGTTGCAACAAGGTTCAAGCTACAAAATGGGTCCTTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTATGGATGACATTGGCACACGTTGTGTGAAGTTTCTTGTTCGTGATGTCCCTTGTGTTTTAAGCAGCCGTGACAGCAACAGTTGCTTCTTGTCAGACAGCTCATAG 2883 0.4044 MEDHFPPKGKEIGYCTSPGVQLEESTSVDGGTKNSVSDDMFSYFSELMNFDTYAGWSNSPSLTDQSLANVFSSFSSPPDGLNLVEHSNGPFFMTEVGEIHNDMESSPSCEERVIFHQMDIQLGFLDDANNLDSKQNHNGTSQKINTSDMCNYIISRSSGRSLNDRMLRALSSFMESADAGMLAQVWLPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKPGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHAMNHEIRGSIALPISDENSQVPCAVLELVTTKEKPNFDRELEIVTHALQLVNLRTTTPPRLLPQCLSSNKRSALTEIIDVLRAVCHAHRLPLALTWIPCCYREGTGDETERIRIKEGRTSSNEKCVLCIEESACYVNDGAVRGFVHACVEHHLVEGQGIAGKALQSNHPFFYTDVKTYDIVEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRTLRTVSDAELTGIEGSQGGFPREKVSGIFPLSRRNSQITFINDDHDSVQKMSLKVSNLKNNGIEAAHSQEMNGSRKQIEKKRCTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQETESHKYLLFPEKSSVKDPKPATQKKISVVSAPGSTSENSAIKLDGNDVGLVGNHLVHSRSVLISSTSEEELKKNNAYSDDSKSMAMNDDGSCKKACHWTNTQDCPEQTCSISLVSDEVEVGADRVEGADEHNHPTSSRTTDSSNGSGSIMHGSSSCSQSFENHKHSKVKSTCVDSGSKIIVKAGYRGDTIRFKFDPSAGCFKLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEIMDDIGTRCVKFLVRDVPCVLSSRDSNSCFLSDSS 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00508 960 SMART PB1_new 860 942 IPR000270 GO:0005515
Cca04g00508 960 MobiDBLite consensus disorder prediction 819 842 - -
Cca04g00508 960 PANTHER PROTEIN NLP8 5 957 IPR045012 GO:0003700
Cca04g00508 960 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 957 - -
Cca04g00508 960 Pfam RWP-RK domain 595 643 IPR003035 -
Cca04g00508 960 Gene3D - 856 939 - -
Cca04g00508 960 SUPERFAMILY CAD & PB1 domains 855 944 - -
Cca04g00508 960 ProSiteProfiles RWP-RK domain profile. 575 663 IPR003035 -
Cca04g00508 960 ProSiteProfiles PB1 domain profile. 860 942 IPR000270 GO:0005515
Cca04g00508 960 MobiDBLite consensus disorder prediction 807 842 - -
Cca04g00508 960 MobiDBLite consensus disorder prediction 747 767 - -
Cca04g00508 960 Pfam PB1 domain 863 941 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00508 Cca-Chr4 4956337 4961046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00508 1 956 NLP Transcription Factor Family AT2G43500 50.000 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca04g00508 PB1 4.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00508 - - gmx:100812527 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00307 10 3243305 3249707 Cca04g00508 04 4956337 4961046 PCT