Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00496 ATGAGAGACCCTTCATTTCATCCCAATCCCAAATGCTTTGCTCTTGTGCAACGAAACAACCCGGAGTGCTGGCACATGGATTTtcatcatcaacacaccccactcttcttcatcatcatcaacaacaccaAGCTACTGAAAGTCCCAAAGGAGTTTCTGAAGCATTTGAATGAAGATTTGTCCAGTGATGCAATTCTTATTGGAACTTCTGGTGGCCAGTGGCAAGTAACTATTTTGAAGAAAGGAAATGAAATTTATATGCAAAATGGTTGGCCACAATTTCTGACAGATAACTCGGTGGTGCTTGATGAGTTCTTGCTGTTTAGATATCTCGGAGATAAATGCTTCCATGTTCAAATTTTTGGTAAGAATGGATGTGAGAGGCCATGCCTCACAGAAACAAGACAAGAAGAAGCTGCCACCCCAAGTTTGGTGAGGACAGAGAAGAGTAGACAAAGAAAAACTTCTTCTGGTTCATTCCTCCACGGATCCAAGTCTTGTCAAGAAGATCTGGCTTTCAGCAACAAATGTTCACTTTCTAATGGATGTAAGACAAAGAAAACAAGGCAAAAACAAGCTGCCACCCCAAGTTTGGTGAGGACTAATAAGAGTAAACAAAGAAAAACTTGTGCTAGTTCATTTCGCCCCCATGAATCCAAGTCTTGTCAAGAAGATATGCCTTTCAACAACAAAGACACACTTTCTAACGGATGTTTCAGAGAAATAAGACAAGAACAAACTGCCACCCCATGTTTGGAGAGGGCAGAAAAATGTAAACAACAAAAAACTTTTGCAGGTTCATTGCACCTCCATGAATCAAAGTCTTATGAAGAAGATCTGGTTTTCAGCAACAAAGGCTTACTTTCTAAGAACTTTTCAAAGCCTCGGAATTCAATTAAATTTGAAAGCTCAGAAGCATGCAAATTGGCTGAGACTTTTACCTCTGGCAAACCTCATTGGAAGCACCTCCTGAGAAAATCTAATGTGGAAAATCCTTGCATATTGCACATTGCTACTGAGTTTGCCAGAATGTATATTCCTGAAGCAGTTACAGAGATCATTCTTTGGAATCCGGAAGGTAAATTTTGGGAAGTAACAGTGAATTCTCAAAGTAAAAGGTATACTCAGCTTACTACAGGATGGGGAAGATTCGTTCGTGATAACAAACTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAGGGAAACGAAGTTAGTGTTCACATATTCAGAACCAGATGTGCCAAATATTAA 1257 0.3819 MRDPSFHPNPKCFALVQRNNPECWHMDFHHQHTPLFFIIINNTKLLKVPKEFLKHLNEDLSSDAILIGTSGGQWQVTILKKGNEIYMQNGWPQFLTDNSVVLDEFLLFRYLGDKCFHVQIFGKNGCERPCLTETRQEEAATPSLVRTEKSRQRKTSSGSFLHGSKSCQEDLAFSNKCSLSNGCKTKKTRQKQAATPSLVRTNKSKQRKTCASSFRPHESKSCQEDMPFNNKDTLSNGCFREIRQEQTATPCLERAEKCKQQKTFAGSLHLHESKSYEEDLVFSNKGLLSKNFSKPRNSIKFESSEACKLAETFTSGKPHWKHLLRKSNVENPCILHIATEFARMYIPEAVTEIILWNPEGKFWEVTVNSQSKRYTQLTTGWGRFVRDNKLMRGDTCIFELEEGNEVSVHIFRTRCAKY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00496 418 ProSiteProfiles B3 DNA-binding domain profile. 320 414 IPR003340 GO:0003677
Cca04g00496 418 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Cca04g00496 418 Pfam B3 DNA binding domain 42 123 IPR003340 GO:0003677
Cca04g00496 418 Pfam B3 DNA binding domain 324 413 IPR003340 GO:0003677
Cca04g00496 418 MobiDBLite consensus disorder prediction 137 164 - -
Cca04g00496 418 SMART B3_2 320 414 IPR003340 GO:0003677
Cca04g00496 418 SMART B3_2 36 124 IPR003340 GO:0003677
Cca04g00496 418 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 413 IPR044837 -
Cca04g00496 418 CDD B3_DNA 34 121 IPR003340 GO:0003677
Cca04g00496 418 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500 35 413 - -
Cca04g00496 418 SUPERFAMILY DNA-binding pseudobarrel domain 315 416 IPR015300 -
Cca04g00496 418 Gene3D - 299 414 IPR015300 -
Cca04g00496 418 Gene3D - 20 126 IPR015300 -
Cca04g00496 418 SUPERFAMILY DNA-binding pseudobarrel domain 32 126 IPR015300 -
Cca04g00496 418 CDD B3_DNA 324 412 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00496 35 126 REM Transcription Factor Family AT3G06220 34.783 2.70e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca04g00496 B3 4.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00496 - - gmx:100815555 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00496 04 4890746 4893618 Cca04g00496 04 4890746 4893618 ECH