Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00495 ATGCCACACCCTTCTTTCCACAAGCTTCTTCTACCCTCTACTCTCCAACCCAACCAACTGAGGCTTCCAGATAATTTTATGAGAAAATATGGTGGCGAAATTTCTCCAATTGTTACCCTCTCAGTTCCTGATGGTAGTGTCTGGCGTGTGGGATTGAAAAAGGCAGACAACAAATATTGGTTCATTGATGGTTGGCAAGAATTCATTCAACGTTATGCCATTGGTGTTGGATACTTGTTGGTATTCGGATTTGAAGGAAAGTCATCTTTCAATGTTCGTATTTTCAATTTGGCCACGTCTGAGATAAACTATCAATCAGCCACGCGAAGCAGTAATGAAGGGCCCTACTTCGCAAATCGTGTCAAGATTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTTGGATTCATCTCCTTCACATCTTGCTTCACAAAATAAAGCTCTTGCTGGATCAGTAGATAAAATGACACCTGGAAAGAGTTATACACCAGCATTGCAGAATCTGTTCAATGGATCAAAACTTAATAGCATAAACTGGGGAGAGGGTGGGAATGCCCATTCTTTGAGAAGCGCCAGTGATAATAGGATGACCAGAGATATTGGAGTTCAGTTTAATGCAGTTGAGTTTAAAAGATCCACTGAAGAATTGAAATTGCGTGCTTCCATCGAGGAAAGGATTAAAAAAACTGCAAGAAAGAAGCGGAAATCAGAAGGCCAGGACCCCTCTGCCGAACATGAAGAAGAGGTAGAAATGCGCTTTAGATTCTATGAAAGTGCTTCTGCAAGAAAAAGAACTGCGACAGCCGAAGAAAGAGAAAGGGCCATCAATATGGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCTTGCGGCCCTCCTATTTATACAGGGGATGTATAATGGTGAGCCCTTGA 927 0.4164 MPHPSFHKLLLPSTLQPNQLRLPDNFMRKYGGEISPIVTLSVPDGSVWRVGLKKADNKYWFIDGWQEFIQRYAIGVGYLLVFGFEGKSSFNVRIFNLATSEINYQSATRSSNEGPYFANRVKIFEEMEDEDSIEILDSSPSHLASQNKALAGSVDKMTPGKSYTPALQNLFNGSKLNSINWGEGGNAHSLRSASDNRMTRDIGVQFNAVEFKRSTEELKLRASIEERIKKTARKKRKSEGQDPSAEHEEEVEMRFRFYESASARKRTATAEERERAINMAKAFEPPNPFCRVVLRPSYLYRGCIMVSP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00495 308 MobiDBLite consensus disorder prediction 235 251 - -
Cca04g00495 308 Gene3D - 1 98 IPR015300 -
Cca04g00495 308 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 308 - -
Cca04g00495 308 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Cca04g00495 308 SMART B3_2 6 98 IPR003340 GO:0003677
Cca04g00495 308 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Cca04g00495 308 PANTHER B3 DOMAIN-CONTAINING 1 308 - -
Cca04g00495 308 CDD B3_DNA 4 96 IPR003340 GO:0003677
Cca04g00495 308 MobiDBLite consensus disorder prediction 231 251 - -
Cca04g00495 308 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00495 Cca-Chr4 4877858 4881663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00495 1 308 B3 DNA Binding Superfamily AT3G18990 45.570 4.95e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca04g00495 B3 1.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00495 - - gmx:100813285 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00495 04 4877858 4881663 Cca04g00495 04 4877858 4881663 ECH