Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00494 ATGACTACTGGTGCCAAGAAACACCCTGACTTCTTCAAAGTCTTCCTTCCGGAACAAAGCTCAGAAAGATTGCTTATCCCAAATTCTTTTGTGAGGTTGATTAACATGCAAGGAAGGATCCCTGAGGATGTCATACTCAGAAATTGTGGTGGGAGAGTTTGGCATGTCAAAACGGGTCGTATTGGAGAGAAGTTATACTTTGATGATGGGTGGAAGGTTTTCCAAGAAGAAAACTGTTTAGGAAAAGCTGACTTTCTGGTCTTTGAGTATGATGGAAGCAATGAGTTCAAGGTATTAATCCTTGAAATATCAACACAGTGTGAAAAGACTGTGGTAAAGATGGAGGAGGAGGAGAATGTAGAAGAGGAAGCAGAAGCACAAGAAGTTGATGAGATGGAGGTGAGAGAGGAGGAAGAACATGAACAAGTTGAGGAGGGTAAGATAGAGGATGAGGAAGATAGTGAAGATGAGGACTatgatagtgatgacgaagatgacagtgcctatgataatggtagtgatgaggatTCAGGGATGGAAGAAGAGATTGAAGAAGAGCACAGTGCTGGAAGCATCGGTCGAAGTTATCTTAGAGCTTGCAAAAGAGAGACTGAATCAAGTTCTACCCCCAGGGTGGAAGGTCCTCTTGAAGTCTATGAATTTGATCCAGAAATGTATATTCAGCCGGAGAATCCATATTTTGAAGCAAAACTCTACAAAAGTAGACGCAATGAATTGCACATTCCAGGAAATGTCATTAAAGACTTTTCCCTCACTTTTCATGAAAAGGTTACCCTCTTTTGTTGCGGATGCTGCCAACGCCGGGATTTTCAAGAAATTGAGTTACGAGAGTATCATCTGAGCTTGGCACAACATGCACCCATCCGAAAAAGATATTTGGAAGTGTCAGGAGAAGTCTGTAGGTGGCTAGATGGTAGAGTATGCGTCAAAGGTTGGTTGAGCTTTTGTAGAAGGAACAAGATGACAAAATATGATACGTGCCTATGTGAAATTATATCAGGGGAAGACCAAATAGTAAGAATGTTTCGAGTGCATGTACTATGTTCTAGGAGGGGATGA 1080 0.3972 MTTGAKKHPDFFKVFLPEQSSERLLIPNSFVRLINMQGRIPEDVILRNCGGRVWHVKTGRIGEKLYFDDGWKVFQEENCLGKADFLVFEYDGSNEFKVLILEISTQCEKTVVKMEEEENVEEEAEAQEVDEMEVREEEEHEQVEEGKIEDEEDSEDEDYDSDDEDDSAYDNGSDEDSGMEEEIEEEHSAGSIGRSYLRACKRETESSSTPRVEGPLEVYEFDPEMYIQPENPYFEAKLYKSRRNELHIPGNVIKDFSLTFHEKVTLFCCGCCQRRDFQEIELREYHLSLAQHAPIRKRYLEVSGEVCRWLDGRVCVKGWLSFCRRNKMTKYDTCLCEIISGEDQIVRMFRVHVLCSRRG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00494 359 MobiDBLite consensus disorder prediction 117 183 - -
Cca04g00494 359 CDD B3_DNA 9 101 IPR003340 GO:0003677
Cca04g00494 359 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Cca04g00494 359 Gene3D - 221 356 IPR015300 -
Cca04g00494 359 Coils Coil 107 137 - -
Cca04g00494 359 MobiDBLite consensus disorder prediction 114 196 - -
Cca04g00494 359 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Cca04g00494 359 SMART B3_2 11 104 IPR003340 GO:0003677
Cca04g00494 359 Gene3D - 2 107 IPR015300 -
Cca04g00494 359 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Cca04g00494 359 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 6 352 - -
Cca04g00494 359 PANTHER B3 DOMAIN-CONTAINING 6 352 - -
Cca04g00494 359 SUPERFAMILY DNA-binding pseudobarrel domain 306 355 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00494 Cca-Chr4 4869290 4874001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00494 9 354 B3 DNA Binding Superfamily AT3G06160 27.171 3.76e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca04g00494 B3 2.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00494 - - var:108340234 362.073