LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00483	ATGGCTTCTTCCGACAAAAACCTTCCCCTCAAGCCAATCCCCGGAAGCTATGGCCTCCCGTTCTTCGGAGCCATGAGCGATAGACACGACTACTTCTACCACCAAGGCCGCGACAAATACTTCGCCACCAGAATCCAAAAGTACAACTCCACCGTCATCAGAACCAACATGCCACCTGGACCCTTCATTTCCTCTAACCCTAGAGTCATCGCGCTCCTCGACGGCCTCTCCTTCTCCGTCCTCTTCGACAACGCCAAAGTCGATAAGCGCGACGTCCTCGACGGCACCTTCATGCCCTCCACCTCCTTCACCGGCGGCTACCGCACCTGTGCTTTTCAGGACACCACCGAACCCTCCCACGCGCTCCTCAAGCGCTTCTACCTCACCTTCCTCGCCTCCAAGCACGACACCTTCCTCCCCCTCTTCCGCAACAACCTCTCCGACCATTTCTCCGACCTCGAAGACAAGCTCGCCGGAAAGTCCGGCAAGGCGAGCTTCAACTCCTCCATCGGCGACGCCGTCTTCAACTTCCTCTTCCGCCTCCTCACGGACAAATCCCCCGCCGACACCAAAATCGGCTCCGACGGGCCCAGCCTCGTCCAAACCTGGCTGGCGGCGCAGCTTGCTCCACTGGCGACGCTAGGGTTACCGAGAATCCTGAACTACGTCGAAGATTTGTTAATCAGAACAATTCCAATCCCGTCGTGGACAGTGAAATCAAGCTACAAGAAACTGTACGAAGGGTTCTCCTCGGCGGGTGCATCGATTCTGGAGGAAGCGGAACGCGCGGGGATTAAGCGCGAAGAAGCGTGCCACAACCTTGTTTTCATGTTAGGGTTCAACGCGCAAGGAGGGTTGGTGAACCAGTTTCCGATTTTAATTAAGTGGATCGGATTGGGCGGTGGAGATTTGCATAAGGAGCTTGCGGAGGAGATCAGGAGCGTTGTTAGGGAGGAAGGCGGGGTGAGTCTGGGAGCGTTGGATAAGATGACTTTGACCAAGTCCGTTGTGTACGAGGCGCTGAGGATAGAGCCTGCGGTTCCCTACCAGTACGCGAGGGCGAGGGAGGATCTGGTGGTGCAGAGCCACGATGCGGCCTACCAGATCAAGAAAGGTGAAATGATCTTTGGATATCAGCCCTTCGCTACCAAGGATCCCAAGATCTTCCACAATCCCGAGGACTTTGTTCCCGATAGGTTCGTTGGGCGTGACGGGGAAAACCTTTTGCGACACGTGTTGTGGTCCAATGGACGCGAGACGGACGACCCCACACCCGATAATAAACAGTGTCCCGCCAAGAATCTGGTGCTGCTCTTGTGCAGGCTCTACTTGGTGGAATTCTTCTTGCGCTATGACACGTTTACCTTCCACTATAAACCCGTGGTTTTGGGACCCGACGTTACCATCAACTCACTCACTAAAGCCTCCTCATTCTGA	1437	0.5539	MASSDKNLPLKPIPGSYGLPFFGAMSDRHDYFYHQGRDKYFATRIQKYNSTVIRTNMPPGPFISSNPRVIALLDGLSFSVLFDNAKVDKRDVLDGTFMPSTSFTGGYRTCAFQDTTEPSHALLKRFYLTFLASKHDTFLPLFRNNLSDHFSDLEDKLAGKSGKASFNSSIGDAVFNFLFRLLTDKSPADTKIGSDGPSLVQTWLAAQLAPLATLGLPRILNYVEDLLIRTIPIPSWTVKSSYKKLYEGFSSAGASILEEAERAGIKREEACHNLVFMLGFNAQGGLVNQFPILIKWIGLGGGDLHKELAEEIRSVVREEGGVSLGALDKMTLTKSVVYEALRIEPAVPYQYARAREDLVVQSHDAAYQIKKGEMIFGYQPFATKDPKIFHNPEDFVPDRFVGRDGENLLRHVLWSNGRETDDPTPDNKQCPAKNLVLLLCRLYLVEFFLRYDTFTFHYKPVVLGPDVTINSLTKASSF	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00483	478	PANTHER	CYTOCHROME P450 26	5	476	-	-
	Cca04g00483	478	SUPERFAMILY	Cytochrome P450	9	457	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca04g00483	478	Pfam	Cytochrome P450	304	405	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca04g00483	478	PANTHER	FATTY ACID HYDROPEROXIDE LYASE	5	476	-	-
	Cca04g00483	478	Gene3D	Cytochrome P450	4	477	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca04g00483	478	PRINTS	E-class P450 group IV signature	330	346	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca04g00483	478	PRINTS	E-class P450 group IV signature	367	381	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca04g00483	478	PRINTS	E-class P450 group IV signature	383	401	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g00483	Cca-Chr4	4756291	4758276	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g00483	3	476	Cytochrome P450	AT5G42650	51.579	3.19e-171	490

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00483	K01723		-	gmx:100810890	834.328

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00483	04	4756291	4758276	Cca04g00483	04	4756291	4758276	ECH