Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00480 ATGATACCTCCTTCTCAGCCACCCCAATGGGGCCCATCGCCCACACCAATCCTCAACAACTCCTTCCTCCCACCGCCGTCAAATTCCCCCGCGGTTGACTTCAGTCCGCCGCTCATAGCAATGGTCGTCGTCGTCGCCGCCGCCTTTCTCCTCGTCACCTACTCCCGCCTCATcgcgcgccacctccgcccgccaatccaccgactgcgccgcagattccgccgccgccgccgATTCCTGGCGTCCTCCGTCGGCGACCTGGAGTCCCTCCCCTACGAATCGCCGCTGGACGGACCGCACGTGTTCTCCCCCTACGGTTTGGACGAAACGGTGATCAAAACGATACCGTTTTCGCTCTACACCGCCAAATACGACGCGCGTTTCGAAGAGTCTTGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGACGATTACGTGAGAACACTCCCCGTTTGCTCCCACACCTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCCGGAGTTCTCTGCGCCGATTCTCCTTTTACTCCGATGATGGCCGCCAGAATCCGACCAAGCTTCGACGACGACACAATTCTCCACCGCATAAGTATAGATCCCCTCCCCGATCCGCCGCCTCCGCCGGTGATCTCCGGCACGCCGGAGATCACGCCGTGCATCGAGGAGAATTCCCCGAGGAGGAACCTAAACCAGAATCACGTGAATACGAATTCAGAGGAATGTTTTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAGCGGAGTTTGGCGTCGGAGAGGATGGTGATGGAACCGGCGACGGCTTCGCCGTGGCGGTACCGGCGAGGGAGTGGAAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCGTTGGGGAAGGCGAGGGTGTTTTCGTTTAGGTATTATAGGGGGATGAAGTCACCGTTTTTACGGCGGAGGGGTTTTTTTCCGTTGTCGGAGTCGAGCGTGAGGTACGGCGGCGGCGGGAGTTCGTCGCGGCGGAGCAAGTCGATGGCGAGTCCGATGTTTCTGCGGTCGAGCCGGTTGAGGTGCGGGGACCCCGAGGCGCTGTTGTCGCCGGAGAGGTTCAACCGGAGGTGA 1146 0.5593 MIPPSQPPQWGPSPTPILNNSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLLVTYSRLIARHLRPPIHRLRRRFRRRRRFLASSVGDLESLPYESPLDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFEESCNDCAVCLLEFEDDDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSFDDDTILHRISIDPLPDPPPPPVISGTPEITPCIEENSPRRNLNQNHVNTNSEECFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSGSFWSKRPSPFGSLGKARVFSFRYYRGMKSPFLRRRGFFPLSESSVRYGGGGSSSRRSKSMASPMFLRSSRLRCGDPEALLSPERFNRR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00480 381 SMART ring_2 135 176 IPR001841 -
Cca04g00480 381 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Cca04g00480 381 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 361 IPR044675 -
Cca04g00480 381 SUPERFAMILY RING/U-box 122 182 - -
Cca04g00480 381 CDD RING-H2_PA-TM-RING 134 177 - -
Cca04g00480 381 Pfam Ring finger domain 133 177 IPR001841 -
Cca04g00480 381 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00480 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 361 - -
Cca04g00480 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00480 Cca-Chr4 4714216 4716284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00480 27 381 C3H Transcription Factor Family AT3G18930 51.861 5.03e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00480 - K19041 gmx:100795347 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00480 04 4714216 4716284 Cca04g00480 04 4714216 4716284 ECH