Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00470 ATGGAGGATTACGCCACCAGCGATGACGATTACCATTATTCCTCCGATCAGGAGGACTCCGTCGATGCCTACGAAAACGACGACCCAGATTACGCCTTGCTCTCTTCCAAGGGTCCCACTACTCAGGTGATTACGAAGGAATCATTGCTAGCTGCACAGAGGGAGGATTTGCGCAGAGTGATGGACATGTTATCGGTGAGAGAGCAGCATGCCCGTACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAAGGAAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGAGGAACATCAGGAGTCTGACTCATCCATTGCTTCTGCAGTAATGTGCTTAATCTGCATGGAGGATGTTCCTAGTAATGAAGTAACGAGAATGGACTGTGGTCATGGCTTTTGCAACTCATGTTGGATAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCACACAAGTGCAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAGACAGCACCCTGACATGGCTGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACTCCTCATTGTGGGAATGCAATACGGGTTGAGGAGGATGAATTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGCTTTAGATGCTTGTCAGAAGCACACTCCCCTTGTTCGTGCTTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAACCATGTCCCAAGTGTCACAAACCTGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGGCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGTAGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAACGGGCAAAGAGGGATCTATATCAGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCTTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGGTTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTATTCAGATCCAGGCGTGTCCTATCATATTCATATGCATTTGCTTTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACTTTTTCAGATGACAAGGTTATGGAGATAAGGATGCAGATAATCAATCTTTCAACAATTATTGATAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTTCATCTTGGCATTCATAGTATTGCTCCATATAAGTCAAAGGGCATTGAGAGGGCGTCGGAACTTTCTGTTTGCTGGGGCAACAATGTCAATGATACTGGTGTAACTGCAGAATTAGATCGACCTTCTGGATCAGGGAGTTCTGATGACAGTGGATGCTCTTCTAGGAAGCGTGCTAGAAAAGAGGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1743 0.42 MEDYATSDDDYHYSSDQEDSVDAYENDDPDYALLSSKGPTTQVITKESLLAAQREDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDKGKSFLFAEAGVSVEEHQESDSSIASAVMCLICMEDVPSNEVTRMDCGHGFCNSCWIEHFIVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSRQHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEEDELCEVECSCGVQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYQYMHYHNRYKAHTDSFKIESKLKETIQGKVAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVMEIRMQIINLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWGNNVNDTGVTAELDRPSGSGSSDDSGCSSRKRARKEGLGGGFFDLNLPAEFVDRN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00470 580 MobiDBLite consensus disorder prediction 1 30 - -
Cca04g00470 580 SUPERFAMILY RING/U-box 118 204 - -
Cca04g00470 580 SUPERFAMILY RING/U-box 262 319 - -
Cca04g00470 580 Gene3D - 250 497 - -
Cca04g00470 580 Pfam Ariadne domain 331 580 IPR045840 -
Cca04g00470 580 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Cca04g00470 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Cca04g00470 580 SMART ibrneu5 262 327 IPR002867 -
Cca04g00470 580 SMART ibrneu5 192 254 IPR002867 -
Cca04g00470 580 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 515 - -
Cca04g00470 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 515 IPR031127 GO:0004842|GO:0016567
Cca04g00470 580 MobiDBLite consensus disorder prediction 535 563 - -
Cca04g00470 580 SUPERFAMILY RING/U-box 192 260 - -
Cca04g00470 580 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Cca04g00470 580 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Cca04g00470 580 MobiDBLite consensus disorder prediction 535 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00470 Cca-Chr4 4658679 4663210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00470 61 521 ARIADNE family AT2G16090 73.978 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00470 K11968 - gmx:100783343 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00470 04 4658679 4663210 Cca04g00470 04 4658679 4663210 ECH